PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7582_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 449aa MW: 48785.9 Da PI: 8.3813 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 50 | 76 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Neem_7582_f_1 50 PGEPDCSYYIRTGLCRFGATCRFNHPP 76 5789*********************97 PP | |||||||
2 | zf-CCCH | 29.6 | 1.2e-09 | 110 | 129 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tG Ck+G++CkF+H++ Neem_7582_f_1 110 YYLKTGMCKFGATCKFHHPR 129 9*****************96 PP | |||||||
3 | zf-CCCH | 35.7 | 1.4e-11 | 153 | 175 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ Neem_7582_f_1 153 ECAYYLRTGQCKFGSTCKFHHPQ 175 6********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.1e-12 | 310 | 336 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Neem_7582_f_1 310 PGQPECQFYMKTGDCKFGAVCRFHHPR 336 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 6e-13 | 356 | 382 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Neem_7582_f_1 356 PGEPLCIFYSRYGICKFGPSCKFDHPM 382 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-8 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 54 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 55 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.15 | 106 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-4 | 110 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.145 | 110 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-6 | 110 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.948 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 150 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 151 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 153 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 154 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-9 | 311 | 336 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-6 | 313 | 339 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 315 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 355 | 382 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 355 | 383 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-10 | 357 | 382 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 358 | 382 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 360 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MEFEAGIPMS RGAAVTEGPS LSPSLNQDAL WQMNLRANEA MESGSLPERP GEPDCSYYIR 60 TGLCRFGATC RFNHPPNRKL AIATARIKGE YPERVGQQEC QACNLSSSSY YLKTGMCKFG 120 ATCKFHHPRD KAGIAGRVSL NILGYPLRAN ELECAYYLRT GQCKFGSTCK FHHPQPTNMM 180 VSLRGSPVYP TVQSPTTPGQ QSYAGGITNW SRASFIPSPR WQAPSSYTPL LLPQGMVSVP 240 GWNAYSGQLG SVSSSESLQQ TAGNNQIYGA SHQSEPTNSG SQGTNSPYHS GSVPAGFYAL 300 QRENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERLI PVPDCVLSPI GLPLRPGEPL 360 CIFYSRYGIC KFGPSCKFDH PMGIFTYNLS TSSSADTPVR RFLGSSSGTG ALNLSSEGLV 420 EAGSGKPRRL SLSETRQMSS GDDNIDTEG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006480413.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024037223.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Refseq | XP_024955986.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024955987.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | V4UQN0 | 0.0 | V4UQN0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006480413.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006428579.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3389 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |