PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7545_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ZF-HD | ||||||||
Protein Properties | Length: 190aa MW: 21370.2 Da PI: 9.9204 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.4 | 7.2e-28 | 34 | 87 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + Y+eC++NhAa++G +a+DGCgEf+++ g++gt+ a+ CaACgCHR+FHR+ev Neem_7545_f_2 34 TSYRECRRNHAAAIGRYAFDGCGEFLKA-GRDGTKGAFLCAACGCHRSFHRKEVI 87 78*************************9.999********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-15 | 32 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.7E-25 | 34 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.519 | 36 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.3E-23 | 36 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 99 | 170 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.09E-15 | 105 | 169 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.118 | 108 | 172 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 3.6E-23 | 111 | 166 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSTSRINPCN NAAANTNTPP QLFNYAAVPE PAATSYRECR RNHAAAIGRY AFDGCGEFLK 60 AGRDGTKGAF LCAACGCHRS FHRKEVIDFQ NGDRLSGEKT TMEIREKGRG KTKRTKITEE 120 QRSKMTRFAE KLGWKPQKHD EEDVEKFCGE VGISRKMFKV WLSNNRRRMA AEKCSAVIGE 180 KNQEGVKESI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-16 | 114 | 166 | 21 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431739.1 | 1e-61 | zinc-finger homeodomain protein 5 | ||||
Refseq | XP_006471248.1 | 1e-61 | zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9SB61 | 1e-35 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2H5Q928 | 3e-60 | A0A2H5Q928_CITUN; Uncharacterized protein | ||||
TrEMBL | V4UZS2 | 3e-60 | V4UZS2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006471248.1 | 5e-61 | (Citrus sinensis) | ||||
STRING | XP_006431739.1 | 5e-61 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18668 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-32 | homeobox protein 22 |
Publications ? help Back to Top | |||
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