PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7280_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 250aa MW: 28530.2 Da PI: 9.1272

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7280_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.9	2.8e-51	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk+++++ Neem_7280_f_1 14 LPPGFRFHPTDEELVVQYLKRKVFACPLPA-SIIPEVDVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIVTSr 105 79**************************.89***********54...46799*****************************99985 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kktLvfy g+ p+g++tdW+mheyrl Neem_7280_f_1 106 GNQIVGMKKTLVFYGGKPPHGSRTDWIMHEYRL 138 6777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-60	10	170	IPR003441	NAC domain
PROSITE profile	PS51005	57.73	14	170	IPR003441	NAC domain
Pfam	PF02365	2.0E-27	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0010089	Biological Process	xylem development
GO:0010150	Biological Process	leaf senescence
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEKINFLKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFACP LPASIIPEVD VCKSDPWDLP 60 GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGLDKQ IVTSRGNQIV GMKKTLVFYG 120 GKPPHGSRTD WIMHEYRLVS AETAAPQKKN LIQSPVVPMD NWVLCRIFLK KRGSKNEDEE 180 TCNENGIIRK QRNNKPVFYD FLTKDRTDLN LAPTSSSSGS SGITEVSSNE SEDHEESSCN 240 SFPYFRRKQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	12	175	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	12	175	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	12	175	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	12	175	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	12	175	18	173	NAC domain-containing protein 19
3swm_B	1e-52	12	175	18	173	NAC domain-containing protein 19
3swm_C	1e-52	12	175	18	173	NAC domain-containing protein 19
3swm_D	1e-52	12	175	18	173	NAC domain-containing protein 19
3swp_A	1e-52	12	175	18	173	NAC domain-containing protein 19
3swp_B	1e-52	12	175	18	173	NAC domain-containing protein 19
3swp_C	1e-52	12	175	18	173	NAC domain-containing protein 19
3swp_D	1e-52	12	175	18	173	NAC domain-containing protein 19
4dul_A	1e-52	12	175	15	170	NAC domain-containing protein 19
4dul_B	1e-52	12	175	15	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00507	DAP	Transfer from AT5G13180	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM589037	1e-63	KM589037.1 Citrus trifoliata NAC domain-containing protein (NAC) mRNA, complete cds.
GenBank	KM589038	1e-63	KM589038.1 Citrus limon NAC domain-containing protein (NAC) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881782.1	1e-155	NAC domain-containing protein 83-like
Refseq	XP_015902286.1	1e-155	NAC domain-containing protein 83-like
Swissprot	Q9FY93	1e-105	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2H5N9X9	1e-152	A0A2H5N9X9_CITUN; Uncharacterized protein
TrEMBL	V4VHI2	1e-152	V4VHI2_9ROSI; Uncharacterized protein
STRING	XP_006483038.1	1e-152	(Citrus sinensis)
STRING	XP_006438824.1	1e-152	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-103	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]