PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_719_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HB-other

Protein Properties

Length: 476aa MW: 53356.5 Da PI: 9.1145

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_719_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.9	9.5e-10	2	29	30	57
HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57 + +LA+++gLte+qV+ WF+ rR kek+ Neem_719_f_2 2 KSQLAEQIGLTEKQVSGWFCHRRLKEKR 29 579************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	1.04E-6	1	29	No hit	No description
PROSITE profile	PS50071	11.677	1	30	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-7	2	29	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-9	2	29	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-7	2	36	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MKSQLAEQIG LTEKQVSGWF CHRRLKEKRL SADEGFAVGR QDRSSGVIQD RGSGLRQDSC 60 GSTKQGDYRS IDPREVQSRM LYGHDFSAAD LAYDHRSQYT AHASGRDNTS SESSSFLQDR 120 LYSQSDDPYA VETSSYIRQN EAITLVNHNR ARSKEYKPSG YLKVKGEKEN VAISAVKKQL 180 GRHYREDGPP LGVEFDPLPP GAFESRSGDP VNEPFYVGNS RWSQSPDVPE IEKQNALGSR 240 YEVDNLKMDF QDSYVGEKLN SRHGSDFKGS KKSHHQLKQK SPVLHCFNSS PRQKSSLNMY 300 EDSDGETPVY DSNQGYSFSS KHDAGWMGLD SIMNHHDPYG GEIDGEEANP LLHNKPIVST 360 KVVRNSECVA KFANSTLGSS KSISKGERGP SKKKAKVKKL YGERKAIKGH CDPAKVKTHP 420 ADEMTFFCFT FDVLPCFNLT LKVAKRAKVE VPQRDFMAKA SYAEIPRWTN QIKGLV

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MKSQLAEQIG LTEKQVSGWF CHRRLKEKRL SADEGFAVGR QDRSSGVIQD RGSGLRQDSC  60
GSTKQGDYRS IDPREVQSRM LYGHDFSAAD LAYDHRSQYT AHASGRDNTS SESSSFLQDR  120
LYSQSDDPYA VETSSYIRQN EAITLVNHNR ARSKEYKPSG YLKVKGEKEN VAISAVKKQL  180
GRHYREDGPP LGVEFDPLPP GAFESRSGDP VNEPFYVGNS RWSQSPDVPE IEKQNALGSR  240
YEVDNLKMDF QDSYVGEKLN SRHGSDFKGS KKSHHQLKQK SPVLHCFNSS PRQKSSLNMY  300
EDSDGETPVY DSNQGYSFSS KHDAGWMGLD SIMNHHDPYG GEIDGEEANP LLHNKPIVST  360
KVVRNSECVA KFANSTLGSS KSISKGERGP SKKKAKVKKL YGERKAIKGH CDPAKVKTHP  420
ADEMTFFCFT FDVLPCFNLT LKVAKRAKVE VPQRDFMAKA SYAEIPRWTN QIKGLV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ395635	8e-40	FQ395635.1 Vitis vinifera clone SS0AFA14YN23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446272.1	0.0	uncharacterized protein LOC18050776
TrEMBL	A0A067EVA8	0.0	A0A067EVA8_CITSI; Uncharacterized protein
STRING	XP_006446272.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-72	HB-other family protein