PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_6964_f_10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | VOZ | ||||||||
Protein Properties | Length: 515aa MW: 57621.9 Da PI: 6.0427 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 443.8 | 2e-136 | 209 | 425 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 pppsaflgpkcalwdc+rpaqg++w+qdycssfha+lal eg+pg+ pvlrp+gi+lkdgllf+al ak+qgk+vgipecegaat+kspwna+el Neem_6964_f_10 209 PPPSAFLGPKCALWDCPRPAQGMDWCQDYCSSFHAALALSEGPPGMGPVLRPGGIGLKDGLLFSALGAKAQGKDVGIPECEGAATSKSPWNAPEL 303 89********************************************************************************************* PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklv 190 fdls+legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm efgglkrsyymdpqp+++fewhlyeyein++da+alyrlelklv Neem_6964_f_10 304 FDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMSEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLV 398 *********************************************************************************************** PP VOZ 191 dekksakgkvskdsladlqkklgrlta 217 d+k+sakgkv++ds+adlqk++grlta Neem_6964_f_10 399 DGKRSAKGKVTNDSVADLQKQMGRLTA 425 *************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MGKGSKTNCK SASHKLFKDK AKNRVDDLQG MFMDLQYARK ESRSVDVAVL EEQVHQMLRE 60 WKAELNEPSP ATSLQQEGSL ATFSSDIYRL LQLCEEEDDA TSKLAAPKPE PNDQILPARD 120 SAVFHEVGYG VNQGQQQHGF PLVDQCKNSP SGVHGTTMNN LEGSTLLDYN HFDLHQDFEQ 180 NFYTGFNVST FGGEDAMHQI SGYLPSICPP PSAFLGPKCA LWDCPRPAQG MDWCQDYCSS 240 FHAALALSEG PPGMGPVLRP GGIGLKDGLL FSALGAKAQG KDVGIPECEG AATSKSPWNA 300 PELFDLSVLE GETIREWLFF DKPRRAFESG NRKQRSLPDY SGRGWHESRK QVMSEFGGLK 360 RSYYMDPQPL NHFEWHLYEY EINKCDACAL YRLELKLVDG KRSAKGKVTN DSVADLQKQM 420 GRLTAEFPSD NKRTVKGRAK VNAKVLIWPS ESNKCNDKDE EDDKFIENCD CLLCSKRYRV 480 ICHSDESIIH EKLCISLVAL KELISDGKDR NLGQK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM472467 | 1e-136 | AM472467.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X222410.24, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467710.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_006467711.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A067GDH6 | 0.0 | A0A067GDH6_CITSI; Uncharacterized protein | ||||
STRING | XP_006467710.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6667 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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