PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6812_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 610aa MW: 70606.4 Da PI: 4.9301

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6812_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.8	3.1e-22	116	199	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + Neem_6812_f_1 116 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 199 69**************************************99888.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-19	116	199	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.963	490	528	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.9E-6	503	530	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MEIEEGSQNS EQLLEDDGND LDIEGSDLGI DSNDLDLEGN DLDIDGNELE IESDGLDIEG 60 NDLESDSKKI LDSESNDHEN YRDDRTVVDG RHTSSGNRYP PPVVGMEFES YDDAYNYYNC 120 YAKELGFAIR VKSSWTKRNS KEKRGAVLCC NCEGFKTIKE ANSRRKETRT GCLAMIRLRL 180 VESNRWRVDE VKLEHNHLFD PERAQNSKSH KKMEAGSKRK VEPSVDVEVR TIKLYRTPVL 240 DSVGYGSSNL NEGEISNHVD WRKCLKLKKG DSQCKVMQSA IAEVFPRAHH RLCLSHVVQS 300 ILEKLGEFPD SEAFQMALNK TVYDSIKVDE FEMAWEAMIQ RFGVADYEWL QALYEDRERW 360 APVYSKDTFF AGMSTFQKGE SMIPFFEDCM RQQTSLKEFF DVYELVLQKK RQKEALDDLE 420 TRDSSPILNT HSYYELQISK IYTNEIFRKF QEEVMMMSCC FSITQVHANG PTVTYIIKER 480 QGEGSLTNVR NIEVMYDKAG VEVRCICGCF NFNGYLCRHA LCILNYNGIE DIPFQYILPR 540 WRKDFKRLNV PDLGSNNFDI TNPVQWFDHL YKRAMQVVGE GMISQDHYMV AWQAFKESLN 600 KVRLVADKHV

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MEIEEGSQNS EQLLEDDGND LDIEGSDLGI DSNDLDLEGN DLDIDGNELE IESDGLDIEG  60
NDLESDSKKI LDSESNDHEN YRDDRTVVDG RHTSSGNRYP PPVVGMEFES YDDAYNYYNC  120
YAKELGFAIR VKSSWTKRNS KEKRGAVLCC NCEGFKTIKE ANSRRKETRT GCLAMIRLRL  180
VESNRWRVDE VKLEHNHLFD PERAQNSKSH KKMEAGSKRK VEPSVDVEVR TIKLYRTPVL  240
DSVGYGSSNL NEGEISNHVD WRKCLKLKKG DSQCKVMQSA IAEVFPRAHH RLCLSHVVQS  300
ILEKLGEFPD SEAFQMALNK TVYDSIKVDE FEMAWEAMIQ RFGVADYEWL QALYEDRERW  360
APVYSKDTFF AGMSTFQKGE SMIPFFEDCM RQQTSLKEFF DVYELVLQKK RQKEALDDLE  420
TRDSSPILNT HSYYELQISK IYTNEIFRKF QEEVMMMSCC FSITQVHANG PTVTYIIKER  480
QGEGSLTNVR NIEVMYDKAG VEVRCICGCF NFNGYLCRHA LCILNYNGIE DIPFQYILPR  540
WRKDFKRLNV PDLGSNNFDI TNPVQWFDHL YKRAMQVVGE GMISQDHYMV AWQAFKESLN  600
KVRLVADKHV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492083.1	0.0	protein FAR1-RELATED SEQUENCE 8-like
Swissprot	Q9SSQ4	1e-124	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2U1MP28	0.0	A0A2U1MP28_ARTAN; Uncharacterized protein
STRING	XP_006492083.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-126	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]