PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6724_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 536aa    MW: 59890.6 Da    PI: 6.278
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6724_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.3e-18122212199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f k +++s+v +  ++ lp +f++ h    +++ t+tledesg  ++ k+  +k++    l++GW++F  a++L egD++vF+l+++ +f  +v +
  Neem_6724_f_1 122 FAKCMVRSHVASCFWMGLPGQFCKLHLP--NKDATVTLEDESGIHYTAKYFAEKTG----LSAGWRQFSTAHNLLEGDVLVFQLIDQLKF--KVYI 209
                    889********************98853..46779***************555555....************************985555..8988 PP

                    E-S CS
             B3  97 frk 99 
                    +r+
  Neem_6724_f_1 210 IRA 212
                    886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-21114213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-23115213IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-23120211No hitNo description
SMARTSM010191.4E-18122213IPR003340B3 DNA binding domain
PROSITE profilePS5086312.703122213IPR003340B3 DNA binding domain
PfamPF023628.2E-16122212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MDLEVKKEVV EEHPNTASHR EQSSEPDRTD DDTTIAELSL DEPMKSTKRK EKEKIILKFK  60
KGPSETVVKP AEPDSGGVKS KSLKKNKDVV DVKGSPTVEP KSPAMIRAEE VQSNLEPEFP  120
SFAKCMVRSH VASCFWMGLP GQFCKLHLPN KDATVTLEDE SGIHYTAKYF AEKTGLSAGW  180
RQFSTAHNLL EGDVLVFQLI DQLKFKVYII RANDFTEVDG ALGLLNLDAQ SKPNDAGKFV  240
IFVVIIIIFC YLLYLLVCCK VSTISMFLTH LPLLWMLRLN FEKDNGETGE VANQHTKKKR  300
KKSLPLAVVQ KKNKKSAQPG SASNLGQPAE QSENDSEEVG SEVLEGSKTS TPAVQFKDVT  360
SLDNFNILVD GLVIDSELPD DIRSKYYKLC CSQNSFLHDS LAQGINFKLV VGTISEIVNI  420
ADAIRACKLS TSRDEFAMWE KALKAFELLG MNVGFLRARL CKLVSLAFES EGAEDTRRYI  480
EAKDKKSQAE DEIRNIEARL AELKGACQRF VAEISSLKWT AESYELKFQE VAKAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425870.10.0B3 domain-containing protein Os01g0234100
RefseqXP_006466621.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLV4SJT60.0V4SJT6_9ROSI; Uncharacterized protein
STRINGXP_006466621.10.0(Citrus sinensis)
STRINGXP_006425870.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM168371012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-36B3 family protein