PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6689_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 188aa    MW: 21358.1 Da    PI: 9.4076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6689_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-066385123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  Neem_6689_f_3 63 FVCEICNKGFQRDQNLQLHRRGH 85
                   89*******************88 PP
2zf-C2H217.41.3e-05139161123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H++t+
  Neem_6689_f_3 139 WKCDKCSKKYAVQSDWKAHQKTC 161
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-66285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-86285No hitNo description
PROSITE profilePS5015710.9496385IPR007087Zinc finger, C2H2
SMARTSM003550.0176385IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-56385IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355100104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-8134160No hitNo description
SMARTSM0035594139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSNITGDEGS FSSGNTGEEV QQLQEKQQQS LQNHLHGSTS GPSDPNAEVI ALSPTTLMAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTTTEVR KRVYICPEPS CVHHNPARAL  120
GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHQKT CGTREYKCDC GTIFSRLILN  180
SSIEHMHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-22135176344Zinc finger protein JACKDAW
5b3h_F1e-22135176344Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480107.11e-117protein indeterminate-domain 2-like
SwissprotQ9LVQ76e-89IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLV4VW001e-121V4VW00_9ROSI; Uncharacterized protein
STRINGXP_006444264.11e-122(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-78C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]