PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_6667_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 185aa MW: 21124.7 Da PI: 9.8205 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.7e-12 | 70 | 162 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 +l +s+v + +l+lp k + ++ +++ + + ++++W++ + + ++g + ++Wk+F+ +n+Lk+gD +vF+l+ + ++ +++v Neem_6667_f_1 70 MILAKSHVQPLYQLMLPAKMT-AIlpSLE--I---PAFLTYKSKEWQMLYHGEVCKG-KRFDTNWKKFATDNKLKVGDGCVFELIeCSsEKIKFRV 158 567788888888999999987.5533222..2...35677899*******5555544.47999********************9954446666666 PP EEE- CS B3 95 kvfr 98 +++r Neem_6667_f_1 159 QILR 162 6665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-14 | 64 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-16 | 64 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.38E-14 | 66 | 162 | No hit | No description |
SMART | SM01019 | 0.0041 | 68 | 164 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.292 | 68 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-10 | 68 | 161 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MPFASAFQRI RVLRAWLFVL KTSALGSSSG KGVKNAQFRD QQFPNASKHI AIELQGDEFW 60 PLSGKPYFTM ILAKSHVQPL YQLMLPAKMT AILPSLEIPA FLTYKSKEWQ MLYHGEVCKG 120 KRFDTNWKKF ATDNKLKVGD GCVFELIECS SEKIKFRVQI LRGDIPSKFE DKTNGESENM 180 PIIIE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024956135.1 | 1e-71 | B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A067E2E3 | 8e-66 | A0A067E2E3_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2H5NSN6 | 2e-65 | A0A2H5NSN6_CITUN; Uncharacterized protein (Fragment) | ||||
STRING | XP_006484742.1 | 5e-71 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18654 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-07 | B3 family protein |