PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6643_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 335aa MW: 36547.5 Da PI: 6.322

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6643_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.5	1.7e-14	258	313	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kr+rr+ +NRe+ArrsR+RK+a + eLe + +L e ++L k l ++ ++++ Neem_6643_f_1 258 DDKRARRMLSNRESARRSRRRKQAHLNELESQAGQLRVEHSSLLKGLTDMNHKCDE 313 69*****************************************9888888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.8E-11	254	312	No hit	No description
SMART	SM00338	8.4E-15	256	320	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.588	258	310	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.9E-12	259	312	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-10	260	308	No hit	No description
PROSITE pattern	PS00036	0	263	278	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MNTLFSVDDF SDSFLSSSPS PPPPPVPATF HACSMNGRSQ SDWDFEKLLE EVTGNPGSIS 60 SLSVNDNSIP GIFGPSVASR SSVTSRVEGI GNDHAVKIKK PYRDQAVAPP LNPYSSASVD 120 SDEYRAYLKS KLDLACAAVA LRAPPPKPQD KSSSIDQNQR TAAKPSELGS QTPVLEKDFL 180 LMNDPDRILF AFQALHGVAE LAQHKADGRL PGTAALPANH TKSAAQFRQS TSGSSRDDSD 240 DDELDGDMET TEGSDQLDDK RARRMLSNRE SARRSRRRKQ AHLNELESQA GQLRVEHSSL 300 LKGLTDMNHK CDEAAVNNRI LKAEIETLRA KYTSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	279	RRSRRRKQ
2	274	279	SRRRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006479611.1	1e-101	light-inducible protein CPRF2 isoform X3
TrEMBL	A0A067FQY4	1e-100	A0A067FQY4_CITSI; Uncharacterized protein
STRING	XP_006479609.1	1e-97	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02640.2	5e-29	bZIP family protein