PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_6451_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 469aa MW: 51980 Da PI: 7.8948 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 145 | 165 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +++ G C +Gd CkF H+ Neem_6451_f_2 145 VCEHWMS-GNCVRGDECKFLHS 165 699***9.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.007 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.89E-7 | 140 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.479 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 2.93E-41 | 157 | 460 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 6.3E-45 | 171 | 461 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 9.4E-6 | 171 | 210 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 5.5E-5 | 175 | 210 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.148 | 178 | 219 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 18.8 | 178 | 381 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 1.7E-7 | 197 | 211 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 197 | 211 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 12 | 250 | 287 | IPR001680 | WD40 repeat |
SMART | SM00320 | 4.2E-6 | 295 | 332 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 1.1E-4 | 301 | 332 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.75 | 302 | 341 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 1.7E-7 | 319 | 333 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 319 | 333 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 0.024 | 335 | 372 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 1.7E-7 | 359 | 373 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 180 | 378 | 419 | IPR001680 | WD40 repeat |
SMART | SM00320 | 7.3 | 422 | 459 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MDVKASRRFT NKRERSFFNS LGQLEGGGGS WPTKKVICFY HLEGRCNRNP CRFLHVESPA 60 PHVNRKIAKQ IPEDVPKKSY SYNRPKKSYS YNRPKNIWVS SGSEDRNQDL IKRNRNYTAP 120 KKLASSTGND ESGNTTITQK TTKNVCEHWM SGNCVRGDEC KFLHSWYRGD GFSMLAKLDG 180 HKKAVCGIAL PLGSEKLYSG SRDGTVRLWD CYTGQCASVI NLGAEVGSLI CEGPWVFAGM 240 PNFVKAWNIE SSAEHSLNGP VGQVYSMVVG NEMLFAGAQD GDILAWKGNP GAKDPFQLAA 300 FLRAHTHAVT CLAVGASKLY SGSMDNTIRV WDLDTLELVM TLDDHTDAPM SLLCWDQYLL 360 SCSLDQTIKV WVATEAGNLE VAYTHNEDHG LLALCGMNDA EGKPVLICSC NDNSVRLYEL 420 PSFIERGRIF SKREVRALQI GPDGLFFTGD GTGMLSVWKL SPKPSEEMS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 3e-20 | 154 | 465 | 8 | 322 | Tako8 |
6g6n_A | 3e-20 | 154 | 465 | 8 | 322 | Tako8 |
6g6n_B | 3e-20 | 154 | 465 | 8 | 322 | Tako8 |
6g6n_C | 3e-20 | 154 | 465 | 8 | 322 | Tako8 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421276.1 | 0.0 | zinc finger CCCH domain-containing protein 48 | ||||
Swissprot | Q9FNZ1 | 1e-162 | C3H63_ARATH; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A2H5PRN8 | 0.0 | A0A2H5PRN8_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SC27 | 0.0 | V4SC27_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421276.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1839 | 28 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 1e-167 | C3H family protein |