PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_6278_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Trihelix | ||||||||
Protein Properties | Length: 160aa MW: 18408.8 Da PI: 9.5639 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 89.9 | 2.7e-28 | 39 | 120 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ Neem_6278_f_1 39 WVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 120 ********************************************************************84...556899***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 29 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.502 | 31 | 95 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3E-5 | 35 | 97 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.37E-5 | 36 | 99 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 8.97E-28 | 37 | 102 | No hit | No description |
Pfam | PF13837 | 1.3E-22 | 38 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MIIEVASNGD LQPQQMILGD SSGGEDHEVK APKKRAETWV QDETRILIAF RREMDGLFNT 60 SKSNKHLWEQ ISAKMREKGF DRSPTMCTDK WRNLLKEFKK AKHQDRGSGS AKMSYYKEID 120 EILKERSKNS QYKTSSVPNS ANKVDTYMQF SDKGLYGDGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 1e-54 | 33 | 118 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438124.1 | 1e-100 | trihelix transcription factor GT-1 isoform X2 | ||||
Refseq | XP_006484031.1 | 1e-100 | trihelix transcription factor GT-1-like isoform X2 | ||||
Swissprot | Q9FX53 | 1e-76 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A067GQN0 | 4e-99 | A0A067GQN0_CITSI; Uncharacterized protein | ||||
TrEMBL | V4VFT0 | 5e-99 | V4VFT0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006438124.1 | 1e-100 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.3 | 3e-81 | Trihelix family protein |
Publications ? help Back to Top | |||
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