PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6227_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

YABBY

Protein Properties

Length: 197aa MW: 22260.2 Da PI: 7.9495

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6227_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	202	2.3e-62	7	159	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q l+ ++ ++ + + e ++ ++++++++ + Neem_6227_f_1 7 VAAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCANLWSVNMAAAFQSLSWQDV--------QAPNYTSPEYRIDLGSSSSKCNNKMTMRAP 94 679*******************************************9999999885........333333334444433333333333322222 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++n +ee ++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Neem_6227_f_1 95 -TNNATEER----VANRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 159 .22333332....369**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.7E-71	8	159	IPR006780	YABBY protein
SuperFamily	SSF47095	4.58E-8	102	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	106	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MSSCIDVAAE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCANLWSV NMAAAFQSLS 60 WQDVQAPNYT SPEYRIDLGS SSSKCNNKMT MRAPTNNATE ERVANRPPEK RQRVPSAYNQ 120 FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LETNNQPKLD DLFTQCYHEF 180 SQASEKRLVS RAALLNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM456097	1e-45	AM456097.2 Vitis vinifera contig VV78X047607.12, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002285328.1	1e-121	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	4e-89	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D7TC40	1e-120	D7TC40_VITVI; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	1e-120	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-91	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]