PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_6198_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 1678aa MW: 188770 Da PI: 7.5924 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.8 | 5.3e-15 | 1143 | 1219 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 lp kf+++++ +k+++ +++l +sg++W v l +++ + +++kGW Fv+++ ++ gD +vF++dg+ f +v+vf++ Neem_6198_f_1 1143 KLPLKFVRHME-SKTCG-QVSLIGPSGNVWHVDL--TQGNDDLFFAKGWPAFVRDHFIECGDLLVFRYDGELHF--TVQVFDQ 1219 69*****6555.55676.9***************..999999**************************996666..9999987 PP | |||||||
2 | B3 | 38.2 | 2.5e-12 | 1344 | 1426 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 s l +p kf +h +++++ ++l++++g sW v+ +k ++++ +GW Fv++n++k gD+++F+l+++ e l+v+++r Neem_6198_f_1 1344 SYTLNIPYKFSMAHL--PKCKTVVILRNLKGASWIVNSVPtTKVHTSHTFCGGWLAFVRSNEIKLGDICIFELVRKCE--LRVHILR 1426 45689*****98885..348889**************95557777779999*********************998444..5888887 PP | |||||||
3 | B3 | 44.6 | 2.6e-14 | 1571 | 1651 | 13 | 96 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 s l +p kf +h + ++++++l++++g+ W+v+ + k+++ +++ +GW Fv+ n++k gD+++F+l+++ e +v++ Neem_6198_f_1 1571 SYTLKIPYKFSMAHL--PDCKTEIVLRNLKGECWTVNSLPDSKGRTvHTFCGGWMAFVRGNDIKIGDICIFELISKCEM--RVHI 1651 45699*****99995..348899***************6655544469999**********************986555..4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53383 | 2.89E-12 | 154 | 398 | IPR015424 | Pyridoxal phosphate-dependent transferase |
Gene3D | G3DSA:3.40.640.10 | 4.5E-30 | 178 | 389 | IPR015421 | Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
SMART | SM01019 | 5.9E-5 | 1133 | 1220 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-19 | 1143 | 1225 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-17 | 1143 | 1222 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.267 | 1144 | 1220 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.86E-16 | 1144 | 1218 | No hit | No description |
Pfam | PF02362 | 2.1E-11 | 1144 | 1219 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-19 | 1324 | 1426 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-21 | 1327 | 1427 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.84E-18 | 1330 | 1426 | No hit | No description |
PROSITE profile | PS50863 | 12.844 | 1332 | 1428 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.6E-10 | 1332 | 1428 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-10 | 1342 | 1426 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-21 | 1552 | 1652 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.51E-22 | 1552 | 1653 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.23E-19 | 1557 | 1651 | No hit | No description |
PROSITE profile | PS50863 | 12.449 | 1559 | 1655 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-12 | 1559 | 1655 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-11 | 1569 | 1651 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1678 aa Download sequence Send to blast |
MHLSLWKPIT HCAALIMDKK TKRRNRSGLT VDVKRKSSVL RQLQENKLKE ALEEASEEGS 60 LAKSQDIDSD SLNHETSFGR SRSLARLHAQ KEFLRATALA ADRIFSSEDS ILQLHDAFSK 120 FLTMYPKYQN TEKIDQLRSD EYGHLSESFA KVCLDYCGFG LFSYIQTQQY WESSAFTLSE 180 ITANLSNHAL YGGAERGSTE HDIKTRIMDY LNIPENEYGL VFTVSRGSAF KLLAESYPFD 240 RNRRLLTMFD HESQSVNWMA QSAKEKGAKV YSAWFKYPSL KLCSRELRKQ ISNKKKKKKG 300 CANGLFVFPV QSRVTGAKYS YQWMALAQQN NWHVLLDAGS LGPKDMDSLG LSLFRPDFII 360 TSFYRVFGSD PTGFGCLLIK KSVMGTLQNQ SGRTGSGMVK ILPVYLQYLS DSMDGLDALA 420 RIDNDAINGN EESMPETEGG SQMPAFSGVF TSNQVRDVFE IEMDQDNSSD RDGASTIFEE 480 VESISVGEVM KSPIFSEDES SDNSYWIDLG QSPFGSENSG QLTKQKTGSP LPPSWFSGRR 540 NNKQFSPKAT SKLSKSPMYE DRRVNLGLHD EPALSFDAAV LSMSQDLDDV KENPEEEQFA 600 ETEPAFGNGE KHTHLEHVGE IQEETDIRDG SLLHDSTLSA VANGFRNKNQ TSGLGHVNFG 660 DASASEIRQD KDSAIRRETE GEFRLLGRRE RDRFAVGRFF VVEENDRVPS MGRRVSFSME 720 EYRKENLSHL EQSDISLTAL PDDESVSDAE YDDEQDWERQ EPEIICRHLD HINMLGLNKT 780 TLRLRYLINW LVTSLLRLRI PSSGEDVGVP LVQIYGPKIK YERGASVAFN VRESSEGRLV 840 HPEIVQKLAE KNGISVGIGI LSHIRIVDSP KQHCGAFELE DRDLCKPMAN GRGDGKNVFY 900 RVEVVTASLG FLTNFEDVYK MWAFVANVFT LTAQVEISYL DSWEMLKQTG KDAKGTLLCS 960 LSLLLFLGFE GDSLFSTVNA TANKLKLSFI VYVVLNNVHI YLSQIFSYPE CDMRKHQEED 1020 YGFERVYKHD SPQWTGPSRA KYNSYLLKAI DQFYLQTGKK LIDLILHLNK SKKIQMQTNN 1080 PGYDAQEKNE VAETAIYINT RYRKKLHRTG TPPASYAASS NCWQAISARA SNLLGIALAR 1140 LPKLPLKFVR HMESKTCGQV SLIGPSGNVW HVDLTQGNDD LFFAKGWPAF VRDHFIECGD 1200 LLVFRYDGEL HFTVQVFDQS ACEKEASFNS QSSQNSRKFD DSRGQKRERE EMAAPSDKVF 1260 QGVLKKLREV SSEFQSECID KNQEAGSCEE KKWCVSLSNS FALPSQSKVC NVKPEDEEKN 1320 VAQSFMSSFP YFVRLMKRFN ISGSYTLNIP YKFSMAHLPK CKTVVILRNL KGASWIVNSV 1380 PTTKVHTSHT FCGGWLAFVR SNEIKLGDIC IFELVRKCEL RVHILRVGKE DQHSQSGKIA 1440 FGLNVGSAGI SCKMFDGVPK KVKNSLKIHS KCTKKVKLCD MEGSNMCDIK KHVGTTKNSA 1500 SGAPCCQSKI GNEKSEVAIQ IGNSIGAEIG SEARSKLRMM VALDEEKAAR SFGSCVPHFV 1560 RIMRKFNISG SYTLKIPYKF SMAHLPDCKT EIVLRNLKGE CWTVNSLPDS KGRTVHTFCG 1620 GWMAFVRGND IKIGDICIFE LISKCEMRVH ISGIGRTELY HQSGKSTSNE SSICDPPL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015884772.1 | 0.0 | uncharacterized protein LOC107420352 | ||||
TrEMBL | A0A2P5FMX8 | 0.0 | A0A2P5FMX8_TREOI; Glycine dehydrogenase (Decarboxylating) | ||||
STRING | EMJ26538 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-17 | B3 family protein |