PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5959_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 157aa    MW: 18297.6 Da    PI: 7.1621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5959_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.41.5e-19111303124
            NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevls 94 
                     Gf F+P++ e+v + L++k +g +  e +++ +++++ y++eP++Lp   ++ + ++ yfF++    y++g+  nr+t  +g Wk tg  k++++
  Neem_5959_f_1  11 DGFTFDPSNLEIV-RLLRNKHAGLTdDESFNFmLDNINFYDHEPEELPgLGIEIGIEKKYFFTHLM--YKHGEVINRQTPsKGSWKMTGPFKDIVD 103
                    6************.89999999988534445559999***********76888899999***9985..56788999966549************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmh 124
                    ++g+   ++k++++   +a+k ekt+W+++
  Neem_5959_f_1 104 EHGNRSATQKSFAYN--KASK-EKTRWLLK 130
                    *************98..3444.68***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.6349157IPR003441NAC domain
SuperFamilySSF1019418.76E-149138IPR003441NAC domain
PfamPF023656.9E-812130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MALSNDKILW DGFTFDPSNL EIVRLLRNKH AGLTDDESFN FMLDNINFYD HEPEELPGLG  60
IEIGIEKKYF FTHLMYKHGE VINRQTPSKG SWKMTGPFKD IVDEHGNRSA TQKSFAYNKA  120
SKEKTRWLLK DCLNWHSVFS TYPTKTKNWK ESSVNDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.14e-06NAC domain containing protein 89