PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_586_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family FAR1
Protein Properties Length: 757aa    MW: 86808.5 Da    PI: 6.8388
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_586_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.22.1e-1655140182
          FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 
                   +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k++r+r+++r+gC+a +++ k+     ++w+vt ++
  Neem_586_f_4  55 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGFPQMKPSEDGKTQRNRKSSRCGCQAYMRIVKRLdfdVAEWHVTGFS 140
                   6***************9998874556679*******************9*******************988765667899998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1355141IPR004330FAR1 DNA binding domain
PfamPF105513.7E-23274366IPR018289MULE transposase domain
PROSITE profilePS509669.495538586IPR007527Zinc finger, SWIM-type
PfamPF044344.7E-5560583IPR007527Zinc finger, SWIM-type
SMARTSM005758.3E-4561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MSETSMASEN GTDLSQDDTG TIEETPEDTI LSQQTSINLV PFVGQRFVSQ DAAYEFYCSF  60
AKQCGFSIRR HRTRGKDGVG RGVTRRDFTC HRGGFPQMKP SEDGKTQRNR KSSRCGCQAY  120
MRIVKRLDFD VAEWHVTGFS NAYMRIVKRL DFDVAEWHVT GFSNVHNHEL LKSNEVRLLP  180
AYCTITPELL KSNEVRLLPA YCTITPDDKT RICMFVKAGM SVRQMLRLME LEKGVKLGCL  240
PFTEIDVRNL LQLEHIAWSY ASSVQLYEAF GDAVVFDTTH RLDSYDMLFG IWVGLDNNGM  300
ACFFGCVLLR DENMQSFSWA LKTFLDFMKG KAPQTILTDQ NIWLKEAIAI EMPQTKHAVC  360
IWHILAKLSD SFPTLLGSCY DDWKAEVYRL YSLELKEDFE EEWRKMVNKY GLHEYKHITS  420
LYALRTFWAL PFLRRYFFAG LLSPCQSEAI NAFIQRIVSV QSQLDHFVER VAEIVEFNDR  480
TGTKQKMQRK MQKISLKTGS PIESHAATIL TPYAFDKLQE ELMMAPQYAS LLVDEGCFQV  540
KHHTEMNRGC KVIWIPCQEH ISCSCHHFEF CGILCRHVLR VLSTDNCFQI PDRYLPSRWR  600
SVFSFFTIPI RSTTREHSDK VQLLESMAST LVSESLETEE RLDVACEQVA MVLSHIKDLP  660
RPVHGMDDVA YTCPSHSLIL PEVEDTDGIV QSITAAHSRE SFTLGGKLKE RRPRDVVDVS  720
RKRRHCSEPC CRQFGHDVSG CPIIGSDNLN ADLLGYM
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488877.10.0protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_015388990.10.0protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A067G8I50.0A0A067G8I5_CITSI; Uncharacterized protein
TrEMBLA0A2H5N6B80.0A0A2H5N6B8_CITUN; Uncharacterized protein
STRINGXP_006488877.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]