PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5742_f_8
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 330aa    MW: 39265 Da    PI: 10.3638
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5742_f_8genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.83.5e-2488170186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W+ qe+++ + +r e+++++ ++k++k lWe +s +m+e+g++rs++qCk+kw+nl +ryk ++++e +     ++++p++++l+
  Neem_5742_f_8  88 QWSVQETKEFLIIRAELDRTFMETKRNKLLWEVISTRMKEKGYNRSAEQCKCKWKNLVTRYKGCETMEPEA---MRQQFPFYSELQ 170
                    7********************************************************************95...55689****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.66681145IPR017877Myb-like domain
CDDcd122034.59E-2387152No hitNo description
PfamPF138371.7E-1988172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNKVTSLMKI YKHSRVEMLL PGLFCSYRIW KSMQSLQSKV IALQPPRTVS KRFPSVTVTW  60
FKENRPEKNK APTPACRLTR KPDDRFPQWS VQETKEFLII RAELDRTFME TKRNKLLWEV  120
ISTRMKEKGY NRSAEQCKCK WKNLVTRYKG CETMEPEAMR QQFPFYSELQ AIFTARMQRM  180
LWAEAEGGAS GSKSKNKAVQ LSSDEEDDNE DSEGEKGNTR KKKKSKSGGN IGGSGSGHSS  240
NLREILEDFM KQQMQIEMQW REAFEARENE RRMKEMEWRR TMEALENERI MMDRRWRERE  300
EQRRMREEAR AEKRDALITA LLNKLRREDM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054174.11e-119PREDICTED: trihelix transcription factor GT-3b-like isoform X1
RefseqXP_021290010.11e-119trihelix transcription factor GT-3b-like
SwissprotQ9SDW02e-70TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A1U8Q5U91e-118A0A1U8Q5U9_NELNU; trihelix transcription factor GT-3b-like isoform X1
STRINGXP_010264622.11e-118(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.13e-54Trihelix family protein