PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5719_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ARR-B

Protein Properties

Length: 470aa MW: 51710.8 Da PI: 5.5793

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5719_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	60.3	4e-19	195	244	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kp + W e+H++Fv+av+qL G+++A+Pk+ lelm+v+gL +++v+SHLQ Neem_5719_f_1 195 KPTVLWLAEIHQQFVNAVNQL-GIDEAVPKRNLELMNVPGLKRDNVASHLQ 244 57789**************.*************************** PP
2	Response_reg	71.6	3.3e-24	35	143	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 v +vdD+ + ++l+++l++ y +v+++++ al+ll +k+ +D++l D+ mp++dG++ll++i e +lp+i+++a g + + + ++ Ga Neem_5719_f_1 35 VHVVDDDTSCHRILETILRRCLY-NVTTCSQVVVALNLLWTKNdcFDVVLSDVHMPDVDGYKLLEHIGLEM-DLPVIMMSADGRVSAVMKGIHHGA 128 689******************.**********9666668******************6654.8******************* PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 d+l+Kp+ +eel + Neem_5719_f_1 129 CDYLVKPIREEELKN 143 **********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	1.0E-34	32	149	No hit	No description
SuperFamily	SSF52172	1.32E-29	32	148	IPR011006	CheY-like superfamily
SMART	SM00448	4.3E-23	33	145	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	37.001	34	149	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.4E-21	35	143	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	4.74E-22	37	148	No hit	No description
SuperFamily	SSF46689	6.09E-10	192	244	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-18	193	244	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-15	195	245	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MAHFQRIVPS SAISYGSSSR ADVAVPEQFP VGLRVHVVDD DTSCHRILET ILRRCLYNVT 60 TCSQVVVALN LLWTKNDCFD VVLSDVHMPD VDGYKLLEHI GLEMDLPVIM MSADGRVSAV 120 MKGIHHGACD YLVKPIREEE LKNIWQHAKI SDEVEYASFV NEGTEGVLKA QKKRICAKEK 180 DDGELENEYP STKEKPTVLW LAEIHQQFVN AVNQLGIDEA VPKRNLELMN VPGLKRDNVA 240 SHLQDLEYGH LASLVVWHLV ATSEPSCLVV SSRSSANFLA GNSPGSVNQN YSFSRSAVIN 300 YNLLSSQSNN PSLNMGQIFD GDIQTKGILS GYVAPCSISP SASSCSVNAI TNQHVQNSTM 360 AFKATGQVPV FVLNLADIQA SYDAKSGEML DQGPLRNLGF IGRGTCIPSQ LAVDEFKSPM 420 NDLNRAKIYF DNSASRVKEK LNLKFVDNAK VGIPMLEQYT SNDLMSVLTD

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MAHFQRIVPS SAISYGSSSR ADVAVPEQFP VGLRVHVVDD DTSCHRILET ILRRCLYNVT  60
TCSQVVVALN LLWTKNDCFD VVLSDVHMPD VDGYKLLEHI GLEMDLPVIM MSADGRVSAV  120
MKGIHHGACD YLVKPIREEE LKNIWQHAKI SDEVEYASFV NEGTEGVLKA QKKRICAKEK  180
DDGELENEYP STKEKPTVLW LAEIHQQFVN AVNQLGIDEA VPKRNLELMN VPGLKRDNVA  240
SHLQDLEYGH LASLVVWHLV ATSEPSCLVV SSRSSANFLA GNSPGSVNQN YSFSRSAVIN  300
YNLLSSQSNN PSLNMGQIFD GDIQTKGILS GYVAPCSISP SASSCSVNAI TNQHVQNSTM  360
AFKATGQVPV FVLNLADIQA SYDAKSGEML DQGPLRNLGF IGRGTCIPSQ LAVDEFKSPM  420
NDLNRAKIYF DNSASRVKEK LNLKFVDNAK VGIPMLEQYT SNDLMSVLTD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006469261.1	1e-123	two-component response regulator ORR21 isoform X3
Swissprot	A2XE31	3e-79	ORR21_ORYSI; Two-component response regulator ORR21
Swissprot	Q8H7S7	3e-79	ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBL	A0A2H5PVX9	1e-121	A0A2H5PVX9_CITUN; Uncharacterized protein
TrEMBL	A0A2H5PVY2	1e-121	A0A2H5PVY2_CITUN; Two-component response regulator
STRING	XP_006469257.1	1e-122	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8150	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01760.1	2e-76	response regulator 14

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]