PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5385_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 316aa MW: 36518.7 Da PI: 9.4629

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5385_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.6e-06	90	113	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff G+C+ G +CkF+H+ Neem_5385_f_3 90 KSILCEFFKV-GQCQKGFKCKFSHD 113 67799999.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.5E-4	88	114	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.831	88	115	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-6	88	113	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	90	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3	139	175	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.967	143	176	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	7.5E-18	196	275	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKPD PTKVSVKKKK 60 EEEKAREKEL NDLFKIAVTQ PKVPVGVDPK SILCEFFKVG QCQKGFKCKF SHDLNVQRKG 120 EKIDIYSDKR DQERKTTMNF WEVCKYFLEA VEKKQYGWFW DCPNGGKDCH YRHALPPGYV 180 LKSQMKALLE EESENIAIED EIEDQRAKVK TSTPMTPELF MQWKKKKMEE REAGLAAQRA 240 DRVKNDRMSG RELFLLDASL FVDDAEAYEK YQRQEEPESS EQKGKGEPAT AGPSTSTEFQ 300 SIKTCPVRAR SYDIIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021888661.1	1e-172	zinc finger CCCH domain-containing protein 11
Swissprot	Q0JHZ2	1e-160	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A2R6R7Z0	1e-170	A0A2R6R7Z0_ACTCH; Zinc finger CCCH domain-containing protein
STRING	evm.model.supercontig_2216.1	1e-171	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4874	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-138	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]