PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_537_f_8
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 481aa    MW: 51303.2 Da    PI: 4.8273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_537_f_8genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-172976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l+++vk++G g+W+++ +  g+ R++k+c++rw ++l
     Neem_537_f_8 29 KGPWTAAEDAILIEYVKKHGEGNWNAVQKNSGLMRCGKSCRLRWANHL 76
                     79******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4942480IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-232579IPR009057Homeodomain-like
SMARTSM007171.6E-142878IPR001005SANT/Myb domain
PfamPF002492.0E-152976IPR001005SANT/Myb domain
SuperFamilySSF466899.39E-2530106IPR009057Homeodomain-like
CDDcd001673.03E-123176No hitNo description
PROSITE profilePS500906.00577108IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-1280110IPR009057Homeodomain-like
SMARTSM007173.281122IPR001005SANT/Myb domain
PfamPF002495.8E-682109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MVSCSGGAGS EGGVSGPRGI GGTIQSLKKG PWTAAEDAIL IEYVKKHGEG NWNAVQKNSG  60
LMRCGKSCRL RWANHLRPNL KKGSFSPDEE KIIIELHAKL GNKWARMAAQ EIQEKAAAAF  120
HLQQQPQHHR RPQNNTSSSL SSLLASQNPA YNPTPSMFNT FNYSSAANPL QNHATSCYSN  180
PNNQFQLYFD TNNTTSGFSL PLSSTHPYAP SSTSLLNQNL QTQTTPMPSF KFNSGNNFQR  240
DMSFSSMITG ASVDNQIDFA AGLEPELPSS QIPPQQAAPA SSGSSGGVCA MGNSSNTNIN  300
DYQISPKTTS GNSGLLDALV QESQKLSSNE KLNGEIFSDV ADKGKSVADA SSGEEEGNDG  360
VESKMVNSGG EASADNQCDE RSSSQSSIGM KVSNQEPELL DEMNSMDDDL MSLLNNFPLS  420
MPLPEWYPGT SVDASNRPLS SDNGDANQQN ASSTPAATSA ASADLQWSLG SCRWNNMPSI  480
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2024108285B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447574.11e-175transcription factor MYB101
RefseqXP_024951245.11e-175transcription factor MYB101
TrEMBLA0A067EI051e-175A0A067EI05_CITSI; Uncharacterized protein
TrEMBLA0A2H5PXJ71e-175A0A2H5PXJ7_CITUN; Uncharacterized protein
STRINGXP_006469761.11e-174(Citrus sinensis)
STRINGXP_006447574.11e-174(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.23e-49myb domain protein 101