PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5271_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 184aa MW: 21005.8 Da PI: 6.6612 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3.1e-15 | 19 | 63 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+ W++eEde+l+ ++k++G g+W+ ++++ g R++k+c+srw+ Neem_5271_f_2 19 RKLWSKEEDEKLIAYIKEYGEGQWRHVPEKAGIDRCGKSCRSRWL 63 567*****************************88**********6 PP | |||||||
2 | Myb_DNA-binding | 30.5 | 8.4e-10 | 74 | 113 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +T+eE +l+ +++ +G++ W Ia+ ++ gRt++++ s+w Neem_5271_f_2 74 DFTAEEAKLISILHTNFGNK-WCEIAKSLP-GRTDEDIGSYW 113 59******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.424 | 14 | 70 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 17 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.95E-24 | 18 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 19 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.30E-10 | 22 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-13 | 70 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 8.691 | 71 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-5 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-7 | 74 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.69E-6 | 75 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MVIKRECSYC KHKTHLTKRK LWSKEEDEKL IAYIKEYGEG QWRHVPEKAG IDRCGKSCRS 60 RWLASLRPNT KCDDFTAEEA KLISILHTNF GNKWCEIAKS LPGRTDEDIG SYWKIKSTIR 120 KLVNSGIEPA SSCNDDDEEE VFYLHGTKNL LGGFLEINER VAQKDLDGEI SAELNLDLTI 180 GPSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-22 | 22 | 125 | 10 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9SZP1 | 2e-37 | MYB4_ARATH; Transcription repressor MYB4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 6e-40 | myb domain protein 4 |