PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5150_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 227aa MW: 25609.2 Da PI: 4.2894

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5150_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	62.7	6.3e-20	75	111	2	37
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ Neem_5150_f_4 75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQ 111 69***********************998****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.6E-20	68	111	IPR003657	WRKY domain
PROSITE profile	PS50811	21.712	69	111	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-17	70	113	IPR003657	WRKY domain
SMART	SM00774	1.4E-14	74	124	IPR003657	WRKY domain
Pfam	PF03106	7.1E-17	76	111	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MDGRFSGNRF VSEQEENDTT PENSSESPPS TTFNDMKMTS TSSPKKRRAM QKRVISVPIK 60 DVEGSRLKGE SAPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QPDPEPEPEQ 120 PEPEPEVEAE REPEPEEKFA DLGDDNTLLT TSADEFTWFG EMETTTSTIL ESPIFAERSG 180 SQVDSDNMSM FFPMREEDES LFADLGELPE CSMVFRHRNL GPEVQIC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467614.1	1e-106	probable WRKY transcription factor 65
Swissprot	Q9LP56	6e-73	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A067GR40	1e-104	A0A067GR40_CITSI; Uncharacterized protein
STRING	XP_006467614.1	1e-105	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-39	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]