PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5079_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 774aa MW: 89793 Da PI: 8.3455

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5079_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.6e-21	59	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF++r+ + ++s+ +g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+++++++eHnHel Neem_5079_f_3 59 DFYCQYAEHVGFKIRTGQLYRSRSDGSVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVRRRDSGKWVLDQVQKEHNHELE 134 6*************************************876..............589**************************96 PP
2	FAR1	67.2	4.1e-21	213	287	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA+++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k+++ g w v++l++eHnH+l Neem_5079_f_3 213 QFYQAYAENMGFRIRIGQLFRSKHDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRKEFGSWIVDRLQKEHNHDL 287 6*************************************999..............4899************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.9E-17	59	134	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.3E-17	213	287	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-30	388	480	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.151	650	696	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-6	671	694	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-6	671	698	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MPKVQDLNIE ECGNAMILKA YPIGVLRVAD NVNGEDEGKS RIERLYAGLE FDSADEARDF 60 YCQYAEHVGF KIRTGQLYRS RSDGSVSSRR FVCSKEGFQL NSRTGCPAFI RVRRRDSGKW 120 VLDQVQKEHN HELESAGENH SPIVHQRNPS ATRSSINVSH RPKMKLFEEV DNGRPCPSGV 180 ISFKRLKRCG GEGECAAEPC TGIEFNSANE AYQFYQAYAE NMGFRIRIGQ LFRSKHDGSI 240 TSRRFVCSKE GFQHPSRVGC GAFMRIKRKE FGSWIVDRLQ KEHNHDLEIQ VGINRKNFAA 300 SKKFIEDVSG GLDSVDIADI NNGIVTKRSR ENNIGSEWYS VLFEYFQTRQ AEDTGFFHSV 360 EVDNGRCMSV FWADGRSRFS CSQFGDAIVF DTSYRKTNYL VPFATFVGVN HHKQPVLLGC 420 ALIANESKES FTWLFQTWLR AMCGCRPKSI IADQDRAIHQ AIAQVFPRTH HRFSMWQIKA 480 KEREFLRTMS NEFRYEYEKC IYQSQTNVQF STMWSALVNR YGLKENVWLK EMYEKRECWV 540 PLYLRGSFFA GIPIGESIES FFGTTLTAQT PLREFISRYN QGLEHRREEE KKEDFNMFNL 600 QAFLQTKEPI EEQCRKLYTL TMFKLFQKEL VQCYNYLVMK TYEEATIVRY LVRNCGNEDE 660 KHVVTFSALN VNCSCQMFEF EGMLCRHILR VFNVLEVKEI PSQYILHRWT RNAVYGVLRD 720 AESGFSAQEL KALMVWSLRE TACKYIESGT GSLEKHKLAY EIMREGGNKL CWQR

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MPKVQDLNIE ECGNAMILKA YPIGVLRVAD NVNGEDEGKS RIERLYAGLE FDSADEARDF  60
YCQYAEHVGF KIRTGQLYRS RSDGSVSSRR FVCSKEGFQL NSRTGCPAFI RVRRRDSGKW  120
VLDQVQKEHN HELESAGENH SPIVHQRNPS ATRSSINVSH RPKMKLFEEV DNGRPCPSGV  180
ISFKRLKRCG GEGECAAEPC TGIEFNSANE AYQFYQAYAE NMGFRIRIGQ LFRSKHDGSI  240
TSRRFVCSKE GFQHPSRVGC GAFMRIKRKE FGSWIVDRLQ KEHNHDLEIQ VGINRKNFAA  300
SKKFIEDVSG GLDSVDIADI NNGIVTKRSR ENNIGSEWYS VLFEYFQTRQ AEDTGFFHSV  360
EVDNGRCMSV FWADGRSRFS CSQFGDAIVF DTSYRKTNYL VPFATFVGVN HHKQPVLLGC  420
ALIANESKES FTWLFQTWLR AMCGCRPKSI IADQDRAIHQ AIAQVFPRTH HRFSMWQIKA  480
KEREFLRTMS NEFRYEYEKC IYQSQTNVQF STMWSALVNR YGLKENVWLK EMYEKRECWV  540
PLYLRGSFFA GIPIGESIES FFGTTLTAQT PLREFISRYN QGLEHRREEE KKEDFNMFNL  600
QAFLQTKEPI EEQCRKLYTL TMFKLFQKEL VQCYNYLVMK TYEEATIVRY LVRNCGNEDE  660
KHVVTFSALN VNCSCQMFEF EGMLCRHILR VFNVLEVKEI PSQYILHRWT RNAVYGVLRD  720
AESGFSAQEL KALMVWSLRE TACKYIESGT GSLEKHKLAY EIMREGGNKL CWQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006419768.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_024047968.1	0.0	protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A067G8F4	0.0	A0A067G8F4_CITSI; Uncharacterized protein
STRING	XP_006419768.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]