PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4984_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | GRAS | ||||||||
Protein Properties | Length: 426aa MW: 47670.9 Da PI: 5.8397 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 277.1 | 5.4e-85 | 89 | 386 | 3 | 305 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL ecA+a+s++d +++++lL+ l+elasp+gd q+la+yf++AL + ++s++++yk+l++ ++++++ +++ + f+evsP+ +f+h++ Neem_4984_f_1 89 KLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAERSHSFDSARKLILKFQEVSPWTTFGHVAS 184 7999**********************************************************9999996555555455555*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledlelee 193 N aIlea+ege+++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+ ++ + ++e+g+r++kfA+ +gvpfefnv+ +rl++l+ e+ Neem_4984_f_1 185 NGAILEALEGETKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTVVVT-ATIVRSVMKEIGQRMEKFARLMGVPFEFNVItGLNRLAELTKET 279 ***************************************************.556999************************94456********* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse..sFlerflealeyysalfdsleaklpreseerikvEr 287 L v+++Ea+aVn++ +l r+ ++er +v+++++sl+Pk+v+vve+ead++s+ +F++ f e+l++y+ f++le++++++s+er ++Er Neem_4984_f_1 280 LGVREDEAVAVNCIGALRRVS------AEERASVIQMFQSLRPKLVTVVEEEADLTSSryDFVKCFEECLRFYTLYFEMLEESFSPTSNERLMLER 369 *******************97......344789*********************9665459*********************************** PP GRAS 288 ellgreivnvvacegaer 305 e +r+iv v+ac ++ Neem_4984_f_1 370 E-CSRSIVRVLACDDDNN 386 *.89*********98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.389 | 61 | 426 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-82 | 89 | 386 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MDITLFTTLK GTTTPTAEAA THSQYFFSTS NHQQLSNGDH IALDMQSNNN NNSNIQPQNS 60 SCHTSTSRSS DSGDPCAATS AGGNKWASKL LKECARAISD KDSSKIHHLL WMLNELASPY 120 GDCDQKLASY FLQALFCKAT ESGQRCYKTL TSVAERSHSF DSARKLILKF QEVSPWTTFG 180 HVASNGAILE ALEGETKLHI IDISNTLCTQ WPTLLEALAT RNDETPHLKL TVVVTATIVR 240 SVMKEIGQRM EKFARLMGVP FEFNVITGLN RLAELTKETL GVREDEAVAV NCIGALRRVS 300 AEERASVIQM FQSLRPKLVT VVEEEADLTS SRYDFVKCFE ECLRFYTLYF EMLEESFSPT 360 SNERLMLERE CSRSIVRVLA CDDDNNALLK RYRAGWALVL PQGTDDSGIY LTWKEEPVVW 420 ASAWKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 1e-136 | 59 | 426 | 5 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-136 | 59 | 426 | 5 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006442965.1 | 0.0 | protein SHORT-ROOT | ||||
Refseq | XP_006478752.1 | 0.0 | protein SHORT-ROOT-like | ||||
Swissprot | Q9SZF7 | 1e-136 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A2H5QBD5 | 0.0 | A0A2H5QBD5_CITUN; Uncharacterized protein | ||||
STRING | XP_006478752.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006442965.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16273 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 1e-137 | GRAS family protein |