PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4872_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 697aa MW: 76140.9 Da PI: 6.9413 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 299 | 319 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++ G C++Gd C +aHg Neem_4872_f_1 299 PCPDHRK-GACSRGDMCEYAHG 319 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.3E-16 | 38 | 170 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 8.39E-15 | 84 | 170 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.28 | 86 | 116 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 1.8E-9 | 86 | 155 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.21 | 86 | 193 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.48E-13 | 88 | 168 | No hit | No description |
SMART | SM00248 | 0.0023 | 121 | 153 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.102 | 121 | 156 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.9E-4 | 294 | 320 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.69 | 299 | 321 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 326 | 357 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 62 | 329 | 352 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MCGGSEKLSS NTLATSSSPQ SKSSPDRNMS NLNEMVKTEH SFSPLLELAA DNDVEGFKKS 60 VCDASAISEV GLWYCCQRLS KKIVLKCRTP LMVAAEYGSV DFVKLTLSLS KTDVNLSCGM 120 DKSTALHCAA SGGSVKAVDV VKLLLLAGAD PNTTDANGHC PFDVIVAHPD VPDLRVALQE 180 LLKNDGSLCS DDLQVTSVGL RFSSSRSSSS DDYSLSSVQC KSDDVPASSV PEKKEYPIDP 240 SLPDIQNSMY TSDEFRMFSF KIRPCSRAYS HDWTECPFAH PGENAKRRDP RKFHYSCVPC 300 PDHRKGACSR GDMCEYAHGI FESWLHPAQY KTRLCKDGTS CLRQVCFFAH TSDELRPLYA 360 STGSGVPSPR SATAMNLMPV SPSSVSAMSP FPYTPPMSPS NDILHSSMAW PQQSIPTLQL 420 PPGNIQASRL RSSLNARNIP AEELNMLQDF EMQQQQLINE SLSRPQFGTS SANFSAHSNT 480 LTPIKLSYAE ILSPRYSDHF AASTVLSPSH KSVVLNQLQQ QEKMLSPIKT NVFPPKNLDH 540 SLLQASFGIS SPRGISPRKV DPISPMSSRR AALAQREKLL QQLCNLSCDL KSDSAIGSPV 600 NSWSKLESSG RKVDWSIQVD ELNRLRKSYS LGLNGEGPDV SSVQSLARET PRIKETTTVP 660 PSRMSFAADG SNLNPESESG DHLGAWIEQL QLDQIVA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446119.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Refseq | XP_006470610.1 | 0.0 | zinc finger CCCH domain-containing protein 56 isoform X1 | ||||
Refseq | XP_006470611.1 | 0.0 | zinc finger CCCH domain-containing protein 56 isoform X1 | ||||
Refseq | XP_006470612.1 | 0.0 | zinc finger CCCH domain-containing protein 56 isoform X1 | ||||
Refseq | XP_024047012.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A067FDI9 | 0.0 | A0A067FDI9_CITSI; Uncharacterized protein | ||||
STRING | XP_006470610.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006446118.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |