PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4637_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 331aa    MW: 36533.3 Da    PI: 6.504
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4637_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.7e-18228262135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Neem_4637_f_5 228 CVHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 262
                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.9E-8222313IPR016679Transcription factor, GATA, plant
SMARTSM004012.6E-15222272IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14226286No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14226260IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.451226258IPR000679Zinc finger, GATA-type
CDDcd002024.66E-13227278No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003208.6E-16228262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
METPEFYIGR YFDAPPSANN FSPEKRAVED QKPSENFNFT IEDLLDFSND DAIMNDAGYL  60
DNVTGNSTDS STVTCNSVVS GGENNFSGNI AGCRSTSSFA DSQFSGELCV PYDDLAELEW  120
LSNFVEDSFS MDQTLQNNHP ELLSGSKPLT PDSSSSSNRP DPASPKGSNP VFLPETPLPG  180
KARSKRSRAA PCDWSTRLLH VSPKTQSTKR DNSNSGSANS ESGCVRKCVH CAAEKTPQWR  240
TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFISTKHS NSHRKVLELR RQKEMQRAQQ  300
QQILSQNSIF MHGGDDYLIH HHNGPDFRHM I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465677.10.0GATA transcription factor 12-like
SwissprotP697815e-78GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2H5PWD90.0A0A2H5PWD9_CITUN; GATA transcription factor
STRINGXP_006465677.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.17e-65GATA transcription factor 9
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]