PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4610_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 276aa    MW: 31044.1 Da    PI: 9.8265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4610_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-11148189351
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                     +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Neem_4610_f_1 148 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 189
                    79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.873123202IPR001471AP2/ERF domain
SMARTSM003801.3E-4147204IPR001471AP2/ERF domain
PfamPF008477.3E-6147190IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-8148192IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-6150194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGKSSFV APLPRNSENS NAPESSTQNV KPVGLHPSAL DNVSLPQGSW  60
YKLSTPKGLA VPVDLAYCLN VLLIYSIFHS EAIAKVEPAS LNVSGASSPE EQNNQPKEQH  120
FQSFSGLPIK RRKRHRRKQI QNQEPCLMRG VYFKNMKWQA AIKVDKKQIH LGTVGSQEEA  180
ARLYDRAAFM CGREPNFELS EEEKQELRQF KWEEFLAFTR RSITHKKYKR RLGAGSHKRS  240
ESPLEENGDG DWDSKQGVIV SGFSASEEVE PDSSAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443556.11e-131ethylene-responsive transcription factor-like protein At4g13040 isoform X3
RefseqXP_006443557.11e-131ethylene-responsive transcription factor-like protein At4g13040 isoform X3
RefseqXP_006443559.11e-131ethylene-responsive transcription factor-like protein At4g13040 isoform X3
RefseqXP_006479235.11e-131ethylene-responsive transcription factor-like protein At4g13040 isoform X3
RefseqXP_006479236.11e-131ethylene-responsive transcription factor-like protein At4g13040 isoform X3
RefseqXP_006479237.11e-131ethylene-responsive transcription factor-like protein At4g13040 isoform X3
RefseqXP_024954446.11e-131ethylene-responsive transcription factor-like protein At4g13040 isoform X3
TrEMBLA0A067FF441e-130A0A067FF44_CITSI; Uncharacterized protein
TrEMBLA0A2H5NJ061e-130A0A2H5NJ06_CITUN; Uncharacterized protein
TrEMBLV4T9411e-130V4T941_9ROSI; Uncharacterized protein
STRINGXP_006443556.11e-131(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-50ERF family protein