PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_4451_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 509aa MW: 59021.9 Da PI: 7.0118

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_4451_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.2	1.2e-22	58	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH ++ Neem_4451_f_1 58 FYNCYAKEQGFGVRVSNTWYR-KSKEKYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMETKRWRIIEVELEHNHLIS 140 9*************99997.66779**********99888.....*********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-19	58	140	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.507	389	427	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0023	402	429	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MDEVSLNTEP VGDDDTDDFE VVGDCAMTEY VGQTGIAQNP LPPAVGMEFE TYEDVYYFYN 60 CYAKEQGFGV RVSNTWYRKS KEKYRGKLSC SSAGFKKKSE ANRPRPETRT GCPAMIKFRL 120 METKRWRIIE VELEHNHLIS PTSGKFYKSH KQIGVGTKRA LQLDAAEGVQ KIRLFRTVII 180 DAEGNGDVDV NGVFGNNKVP EKLQGLFDFE AIRLALHRTI YHSLRPEEFE TAWEAMIQRH 240 GIREHRWIQS LYEDRRRWAP VYLKEAFLSG LFSFQQNEVL TSYFEGYLDK NTPLKEFLDK 300 YDQALQANYQ LEALADMESR NSSCMLKSRY YYELQLSKLY TNEILRKFGR EVEGMYACFS 360 TKHVGTDSPV VTYIVKEEFE VDGSRKDSRA VDVLYNASEM EILCACGLFN SRGYLCRHIL 420 NVLNQNGVGE IPSQYILLRW RKDIKRSYVL DHSCSGIDIN NPVHRYDHLY KRIVQVVENG 480 RKSQDRYKVT LQALDDILSK LHLVQDHQV

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MDEVSLNTEP VGDDDTDDFE VVGDCAMTEY VGQTGIAQNP LPPAVGMEFE TYEDVYYFYN  60
CYAKEQGFGV RVSNTWYRKS KEKYRGKLSC SSAGFKKKSE ANRPRPETRT GCPAMIKFRL  120
METKRWRIIE VELEHNHLIS PTSGKFYKSH KQIGVGTKRA LQLDAAEGVQ KIRLFRTVII  180
DAEGNGDVDV NGVFGNNKVP EKLQGLFDFE AIRLALHRTI YHSLRPEEFE TAWEAMIQRH  240
GIREHRWIQS LYEDRRRWAP VYLKEAFLSG LFSFQQNEVL TSYFEGYLDK NTPLKEFLDK  300
YDQALQANYQ LEALADMESR NSSCMLKSRY YYELQLSKLY TNEILRKFGR EVEGMYACFS  360
TKHVGTDSPV VTYIVKEEFE VDGSRKDSRA VDVLYNASEM EILCACGLFN SRGYLCRHIL  420
NVLNQNGVGE IPSQYILLRW RKDIKRSYVL DHSCSGIDIN NPVHRYDHLY KRIVQVVENG  480
RKSQDRYKVT LQALDDILSK LHLVQDHQV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024035853.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_024035972.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_024035973.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2H5QT50	0.0	A0A2H5QT50_CITUN; Uncharacterized protein (Fragment)
STRING	XP_002517670.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-93	FAR1-related sequence 6