PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_42385_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 290aa MW: 33530.4 Da PI: 6.526

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_42385_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98	8.3e-31	102	186	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r +e+r+ + lk+plWeevs+ m++ g++rs+k+Ckekwen+nk+++k ke+ kkr s++s+tc yfdql+ Neem_42385_f_1 102 RWPKDEVEALIQVRIGLESRFLEPGLKGPLWEEVSSLMASMGYQRSAKRCKEKWENINKYFRKAKETGKKR-SPRSKTCTYFDQLD 186 8*******************************************************************8.77788******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.02E-25	101	166	No hit	No description
Pfam	PF13837	1.8E-21	101	188	No hit	No description
PROSITE profile	PS50090	6.934	101	159	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDHQEGLHRK YLEAVHRMDK ERAEREEKWR QQETEKHNRE AIARAHEQSI ASNREDQLIS 60 LIQKITGRSI NLPPRKSALL LQPQLTKEQT KELTGMKGET NRWPKDEVEA LIQVRIGLES 120 RFLEPGLKGP LWEEVSSLMA SMGYQRSAKR CKEKWENINK YFRKAKETGK KRSPRSKTCT 180 YFDQLDQLYS RTPLNLPSSS SNPAFDSDIE QQNQGYSELL EAFAAERDHL GIAQNTSTAG 240 NFDVFEMGSL RLNFDGIPNN QTIEFEQGRH GNENKDCVEE HKVDGEQQVE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021596805.1	1e-106	trihelix transcription factor GTL2-like
Refseq	XP_021596807.1	1e-106	trihelix transcription factor GTL2-like
Refseq	XP_024446116.1	1e-107	trihelix transcription factor GTL1
TrEMBL	A0A3N7G6B9	1e-109	A0A3N7G6B9_POPTR; Uncharacterized protein
STRING	POPTR_0018s05540.1	1e-109	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16469	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-46	Trihelix family protein