PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_41287_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 641aa MW: 74469.7 Da PI: 6.5117

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_41287_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.7	6.2e-21	18	109	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Neem_41287_f_2 18 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVRKKPGGEHHRDRKSVRCGCDAKMYLSKEVvdgISQWFVVQFSNVHNHELL 109 59******************8888.****************9******************99866789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-18	18	109	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-21	241	332	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	513	548	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-6	515	548	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0026	523	550	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MVAPYVGMVF KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVR 60 KKPGGEHHRD RKSVRCGCDA KMYLSKEVVD GISQWFVVQF SNVHNHELLE GDQVRLLPAY 120 RKIHEADQER ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKRAIQEN 180 DALLTEKREN DTMELLDICK ATKETDENFV YNFTVDESNK VENIAWSYPE SVNAYTVFGD 240 VVYFDTTYRS VTYGMIFGAW LGIECNGRTI FFGCALLQDE TLHSFAWALQ TFVRFMKGRC 300 PQTIITDLDP GLRDAIRREL PNTRHVISLY NILPKLSGWF SLSLGPQFSE FKSEFDALCH 360 VENTEDFELR WSQMVSMFGL GSDKHIALLY AIRTSWASSY TRGYFLAQIT TTVYSKSVDA 420 FLKGIFTAQT CLRSFFEQIG LSTNLQNQPR REMQYMHMKT CMPIEEQARR TLTPFAFTAF 480 QHELVLAMQY AASEMSNGSY LVRHFKKMDG ECLVVWIPED EQIHCSCKEF ESSGTLCRHA 540 FRVFIAKNYF QLPEKYFLSR WRRESSLAFF YDPDTQHNND EWLQEFYSLT ETLLSESSVT 600 KERSDYICKE LTKELTRLLN EVRDMPDSDG IAMDFTLSPT D

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MVAPYVGMVF KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVR  60
KKPGGEHHRD RKSVRCGCDA KMYLSKEVVD GISQWFVVQF SNVHNHELLE GDQVRLLPAY  120
RKIHEADQER ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKRAIQEN  180
DALLTEKREN DTMELLDICK ATKETDENFV YNFTVDESNK VENIAWSYPE SVNAYTVFGD  240
VVYFDTTYRS VTYGMIFGAW LGIECNGRTI FFGCALLQDE TLHSFAWALQ TFVRFMKGRC  300
PQTIITDLDP GLRDAIRREL PNTRHVISLY NILPKLSGWF SLSLGPQFSE FKSEFDALCH  360
VENTEDFELR WSQMVSMFGL GSDKHIALLY AIRTSWASSY TRGYFLAQIT TTVYSKSVDA  420
FLKGIFTAQT CLRSFFEQIG LSTNLQNQPR REMQYMHMKT CMPIEEQARR TLTPFAFTAF  480
QHELVLAMQY AASEMSNGSY LVRHFKKMDG ECLVVWIPED EQIHCSCKEF ESSGTLCRHA  540
FRVFIAKNYF QLPEKYFLSR WRRESSLAFF YDPDTQHNND EWLQEFYSLT ETLLSESSVT  600
KERSDYICKE LTKELTRLLN EVRDMPDSDG IAMDFTLSPT D

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467286.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_006467287.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A067GT76	0.0	A0A067GT76_CITSI; Uncharacterized protein
STRING	XP_006467286.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]