PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_41209_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 210aa MW: 23949 Da PI: 9.6219 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.7 | 3.1e-11 | 70 | 156 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +l +s+v + +l+lp k + ++ +++ + + ++++W++ + + ++g + ++Wk+F+ +n+Lk+gD +vF+l++ s+++ ++ Neem_41209_f_1 70 MILAKSHVQPLYQLMLPAKMT-AIlpSLE--I---PAFLTYKSKEWQMLYHGEVCKG-KRFDTNWKKFATDNKLKVGDGCVFELIECSSEKIKF 156 567788888888999999987.5533222..2...35677899*******5555544.47999********************99767665554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-12 | 64 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-15 | 64 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-12 | 66 | 160 | No hit | No description |
SMART | SM01019 | 0.0057 | 68 | 160 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.446 | 68 | 162 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-9 | 68 | 155 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MPFASAFQRI RVLRAWLFVL KTSALGSSSG KGVKNAQFRD QQFPNASKHI AIELQGDEFW 60 PLSGKPYFTM ILAKSHVQPL YQLMLPAKMT AILPSLEIPA FLTYKSKEWQ MLYHGEVCKG 120 KRFDTNWKKF ATDNKLKVGD GCVFELIECS SEKIKFRVNK LKVGDGCVFE LIECSSEKIK 180 FRVQILRGDI PSKFEDKTNG ESENMPIIIE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024956135.1 | 1e-65 | B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A067E2E3 | 5e-60 | A0A067E2E3_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006484742.1 | 4e-65 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18654 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 5e-06 | B3 family protein |