PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_40775_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 220aa    MW: 25751.5 Da    PI: 8.825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_40775_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.7e-067093226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k  lC f+   G+C  G +CkF+H+
  Neem_40775_f_1 70 KSILCEFYKV-GQCTKGFKCKFSHD 93
                    6779**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-46894IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8596895IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-66993IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-47094IPR000571Zinc finger, CCCH-type
SMARTSM003564.5138175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953138176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MPPKQQSKAE LAKKQKIVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKPD QTKVVAKVRS  60
SYDHPCVDPK SILCEFYKVG QCTKGFKCKF SHDLNVQRKG EKIDIYSDKR DQGTMEDWDQ  120
ETLEKVVASK NKEYQQNKPT DIVCKYFLEA VEKKQYGWFW VCPNGGKDCH YRHALPPGYV  180
LKSQMKALLE EEAEKISIEE EIENQYLWSQ CMIDGQIFYY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818963e-42LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132643e-42LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617616.11e-123PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ21e-116C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A1R3HSS61e-127A0A1R3HSS6_9ROSI; Zinc finger, CCCH-type
STRINGXP_002525195.11e-122(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-104C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]