PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4045_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | EIL | ||||||||
Protein Properties | Length: 424aa MW: 48241.1 Da PI: 5.8568 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 259.1 | 2.1e-79 | 1 | 235 | 152 | 353 |
SSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHH CS EIN3 152 mqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfall 247 mqhcdppqrrfplekg +pPWWPtGke+ww++lgl+kd g ppykkphdlkkawkvsvLtavikhmsp+i+++r+l+rqsk+lqdkm+akes+++l Neem_4045_f_1 1 MQHCDPPQRRFPLEKGNAPPWWPTGKEDWWPQLGLPKDLGSPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKVRKLVRQSKCLQDKMTAKESATWL 96 8*********************************************************************************************** PP HHHTTTTT-S--XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX................................XXXXXXX CS EIN3 248 svlnqeekecatvsah..ssslrkqspkvtlsceqkedvegkkeskikhvqavktta................................gfpvvrk 309 +v+nqee++ ++++++ ++ + +s ++++s+ +++dveg ++ + +v++ k ++ ++++v+k Neem_4045_f_1 97 AVINQEEALSRKLYPDscPPVSAGGSGSFIISDTSDYDVEGVDDDQNIEVEEIKPHDvnlfnlgavgtrdrhvmttsmlpqikgeivetNTDFVQK 192 ****************65446677****************5555555669999998899************************************* PP XXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 310 rkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 rk++ +e+ + ++++ +tc+ ++++++++l+f d++s+++++ Neem_4045_f_1 193 RKQQADEPHMLMDQK-LYTCEYPHCPYNDYRLGFLDRTSRNNHQ 235 ***999999999997.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.3180.10 | 3.5E-61 | 1 | 113 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 8.5E-51 | 1 | 106 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Pfam | PF04873 | 9.1E-53 | 1 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MQHCDPPQRR FPLEKGNAPP WWPTGKEDWW PQLGLPKDLG SPPYKKPHDL KKAWKVSVLT 60 AVIKHMSPDI AKVRKLVRQS KCLQDKMTAK ESATWLAVIN QEEALSRKLY PDSCPPVSAG 120 GSGSFIISDT SDYDVEGVDD DQNIEVEEIK PHDVNLFNLG AVGTRDRHVM TTSMLPQIKG 180 EIVETNTDFV QKRKQQADEP HMLMDQKLYT CEYPHCPYND YRLGFLDRTS RNNHQLNCPY 240 RNNSSQGIGV PNFQINNEQR VAFSRPPNQP KPMTPAKNQT QPHFNLSGLG LPDDGQKMIS 300 DLMSFYDTNN KQNKGLNPGS LSVMEDQNQQ QEQQKFQLQM DDSFYNQGGM MGGNMPSQTN 360 MQMNNSVFSS AEIRFDQCKA FESPFDTNPG DNMSDFRFNS PFNMASVDYG LDPIPKQDVS 420 MWYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 3e-68 | 1 | 113 | 22 | 134 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 3e-68 | 1 | 113 | 22 | 134 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432537.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 1e-111 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | V4SDU1 | 0.0 | V4SDU1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006471293.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006432536.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 1e-113 | EIL family protein |