PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_39493_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 268aa MW: 31146.1 Da PI: 6.2573

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_39493_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.5	6.6e-37	5	133	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +G+rF+Pt++e+++++ ++k+ + + + i++v +i+++ePwdLpk+ ++ wy F ++ +++ +r+ r+t++gyWk tgk +++ + Neem_39493_f_2 5 MGMRFRPTEQEIITDFVERKTCLPSWTP-RRIPDVkNICQFEPWDLPKHSPLppDDGVWYLFNFPASMSPNTNRTCRKTQKGYWKVTGKPRRIRD 98 7*****************99999777.5688888*******5332244778*********************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++++g k++Lvf++gr+p+g+kt+Wvmheyr Neem_39493_f_2 99 KrGKKEIGYKRILVFHTGRHPNGVKTNWVMHEYRS 133 967778*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.897	3	151	IPR003441	NAC domain
Pfam	PF02365	1.1E-18	5	132	IPR003441	NAC domain
SuperFamily	SSF101941	2.48E-39	5	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDDSMGMRFR PTEQEIITDF VERKTCLPSW TPRRIPDVKN ICQFEPWDLP KHSPLPPDDG 60 VWYLFNFPAS MSPNTNRTCR KTQKGYWKVT GKPRRIRDKR GKKEIGYKRI LVFHTGRHPN 120 GVKTNWVMHE YRSCNVPSNK VEYALFRLER KMGDSSDTCN EASGDPAFDY TNDVAGALVV 180 NDNLSEELKF LLDSNEPDSH FLSQLFPPIQ PEQRTSFFEL DGNSSSERME EGTEATDTDI 240 FFTEVKKFHP INSYWTLEIL LQLPVYCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-20	6	132	20	141	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-20	6	132	20	141	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-20	6	132	20	141	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-20	6	132	20	141	NO APICAL MERISTEM PROTEIN
3swm_A	4e-20	6	132	23	144	NAC domain-containing protein 19
3swm_B	4e-20	6	132	23	144	NAC domain-containing protein 19
3swm_C	4e-20	6	132	23	144	NAC domain-containing protein 19
3swm_D	4e-20	6	132	23	144	NAC domain-containing protein 19
3swp_A	4e-20	6	132	23	144	NAC domain-containing protein 19
3swp_B	4e-20	6	132	23	144	NAC domain-containing protein 19
3swp_C	4e-20	6	132	23	144	NAC domain-containing protein 19
3swp_D	4e-20	6	132	23	144	NAC domain-containing protein 19
4dul_A	4e-20	6	132	20	141	NAC domain-containing protein 19
4dul_B	4e-20	6	132	20	141	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_006491403.1	3e-60	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17987	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-31	NAC domain containing protein 2