PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_39437_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 155aa    MW: 18248.5 Da    PI: 6.7994
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_39437_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.52.4e-4461382127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                     ppGfrF Pt+eelv++yL++k+eg++      ++++i+ v+iy+++PwdLp+     ++ + ++w+fF++r++++a+g r+nr t++gyWkatg+
  Neem_39437_f_1   6 PPGFRFYPTEEELVSFYLHHKLEGRRedvnRVMDRIIPVVNIYDYNPWDLPQfseyLCHRDPEQWFFFIPRQENEARGGRPNRLTTAGYWKATGS 100
                     9*************************6664333447999***********9646653344667******************************** PP

             NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        v+s +++++g k+t+vfy+grap+g+kt+W m+ey+
  Neem_39437_f_1 101 PGFVYS-SNRAIGEKRTMVFYRGRAPNGTKTEWKMNEYK 138
                     ******.8899***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-463144IPR003441NAC domain
PROSITE profilePS5100544.4435155IPR003441NAC domain
PfamPF023653.5E-236138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVEEYPPGFR FYPTEEELVS FYLHHKLEGR REDVNRVMDR IIPVVNIYDY NPWDLPQFSE  60
YLCHRDPEQW FFFIPRQENE ARGGRPNRLT TAGYWKATGS PGFVYSSNRA IGEKRTMVFY  120
RGRAPNGTKT EWKMNEYKAI EGEASTYSTA GIPMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-33613816139Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481732.13e-89NAC domain-containing protein 90-like
SwissprotQ9FMR33e-57NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2H5MYF98e-88A0A2H5MYF9_CITUN; Uncharacterized protein
STRINGXP_006481732.11e-88(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-59NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]