PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_38877_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 445aa MW: 49543.7 Da PI: 7.5429

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_38877_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.2e-07	192	212	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ff + G+C G++C+F H+ Neem_38877_f_1 192 VCDFFTK-GWCIKGNSCRFLHV 212 79999.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.568	187	214	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0014	187	213	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	187	211	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.4E-5	192	212	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-4	192	215	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MESQGHKSHL ESGSSTEDKS KARQPSNALA VGESRVNFKS LGSSNEPFTS QKELSHENQE 60 KSKYSKSRKL LSYAEDNGSQ ESEISKKDIG AFPQVKTHEE RNELHTGGKV HLCNTGIVDS 120 ETSSPSSVTK KNVTGGTWIR DRLDEGTSEE EIKPMGMHPG DDKQRMASRF SSPMIRTRSL 180 SPADGNKRPA VVCDFFTKGW CIKGNSCRFL HVKDDTTNST QLLEEDLAAA TVKTEVQFNE 240 GSRNETERSK MACFPDPLAL SVRNNVSFSS DLSSEREPPL QEVGENKRLP QENHRPSFLQ 300 KENTSSDNSP SSQQLASFRD DMGSILSYKE VGRESLRKNW PADDYGNSAS LKHRASSPIF 360 KNNLLPEYRS SSSGSATLSS NYHSRNPSSY PSSLEEQPWI RSKCMRNDYS SPFSSHSLNS 420 SVVLLMLKSC WTVRENPVIL SCLCF

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MESQGHKSHL ESGSSTEDKS KARQPSNALA VGESRVNFKS LGSSNEPFTS QKELSHENQE  60
KSKYSKSRKL LSYAEDNGSQ ESEISKKDIG AFPQVKTHEE RNELHTGGKV HLCNTGIVDS  120
ETSSPSSVTK KNVTGGTWIR DRLDEGTSEE EIKPMGMHPG DDKQRMASRF SSPMIRTRSL  180
SPADGNKRPA VVCDFFTKGW CIKGNSCRFL HVKDDTTNST QLLEEDLAAA TVKTEVQFNE  240
GSRNETERSK MACFPDPLAL SVRNNVSFSS DLSSEREPPL QEVGENKRLP QENHRPSFLQ  300
KENTSSDNSP SSQQLASFRD DMGSILSYKE VGRESLRKNW PADDYGNSAS LKHRASSPIF  360
KNNLLPEYRS SSSGSATLSS NYHSRNPSSY PSSLEEQPWI RSKCMRNDYS SPFSSHSLNS  420
SVVLLMLKSC WTVRENPVIL SCLCF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467754.1	1e-171	protein FRIGIDA-ESSENTIAL 1 isoform X1
Refseq	XP_006467755.1	1e-171	protein FRIGIDA-ESSENTIAL 1 isoform X1
Refseq	XP_006467756.1	1e-171	protein FRIGIDA-ESSENTIAL 1 isoform X2
Refseq	XP_024047646.1	1e-171	LOW QUALITY PROTEIN: protein FRIGIDA-ESSENTIAL 1
Refseq	XP_024951114.1	1e-171	protein FRIGIDA-ESSENTIAL 1 isoform X1
Refseq	XP_024951115.1	1e-171	protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBL	A0A067GDI0	1e-170	A0A067GDI0_CITSI; Uncharacterized protein
STRING	XP_006467754.1	1e-170	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15617	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-16	C3H family protein