PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_38832_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 148aa MW: 16824.8 Da PI: 9.8601 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 30 | 1.1e-09 | 127 | 148 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDg++WrKYGqK++ g+++pr Neem_38832_f_1 127 LDDGFSWRKYGQKDILGARYPR 148 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 10.533 | 122 | 148 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-7 | 124 | 148 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-7 | 126 | 148 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-6 | 128 | 148 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGEWEQNNLI SELKQGRELA KQLQIHMNIS SSSHDQTRGM LVQRIIFSYE KALSMLNFTS 60 SSASGEPQIM GPPIESPPSL NGSPRSEDSD RDAKDQEQKD GSRKRKTFPR WTNRVRINPV 120 TGLEGTLDDG FSWRKYGQKD ILGARYPR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 106 | SRKRKT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023899975.1 | 2e-68 | probable WRKY transcription factor 53 | ||||
TrEMBL | V4S948 | 7e-64 | V4S948_9ROSI; Uncharacterized protein | ||||
STRING | XP_006422120.1 | 1e-64 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 2e-30 | WRKY family protein |