PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_38468_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 265aa MW: 30070.4 Da PI: 4.7066 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.6 | 4.5e-12 | 119 | 165 | 16 | 59 |
TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 16 kgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +g +sY+rCt++ gC+++k+v+r +edp+ +e+tY ++H ++ Neem_38468_f_1 119 RGCYKRKSYFRCTHKyeqGCRATKQVQRMDEDPQKFETTYISNHSCR 165 5666779*******99999*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 12.117 | 99 | 163 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-12 | 104 | 165 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-12 | 116 | 165 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-9 | 116 | 166 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-11 | 119 | 165 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MGSQLWSEKL SVNRKKIVKE LVQGKKFAEQ LQVLLQKGFE ADGSASAEDL VVKILRSFTQ 60 TLSVLSSCDD DRVSDDQNLL QQAASCNQAA SCNVSSFSDD RKSEDSGHSM KRPMTKDRRG 120 CYKRKSYFRC THKYEQGCRA TKQVQRMDED PQKFETTYIS NHSCRDIISF PQIITGSDPW 180 SSTVSTDSYV VSMPTEVKQE CKEDTTSDDL SDNLSSLDHI MWEDFMSLQS SEPAPMVSLQ 240 IGSREYSEMG DFGQEFNFDE SHELF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-12 | 102 | 165 | 6 | 69 | OsWRKY45 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435943.1 | 2e-83 | probable WRKY transcription factor 70 | ||||
Refseq | XP_006486150.1 | 2e-83 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A2H5PNJ4 | 5e-82 | A0A2H5PNJ4_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SN49 | 5e-82 | V4SN49_9ROSI; Uncharacterized protein | ||||
STRING | XP_006486150.1 | 8e-83 | (Citrus sinensis) | ||||
STRING | XP_006435943.1 | 8e-83 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 1e-25 | WRKY DNA-binding protein 70 |