PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_37850_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Protein Properties

Length: 347aa MW: 39647.9 Da PI: 10.3291

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_37850_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.5	1.2e-18	137	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v + +l lp+kf++eh k + ++++lede+ +++e +i +k++ l++GW+ F+ +++L++gD +vF+l++ ++f +++ Neem_37850_f_1 137 FVKSMVRSHVYSCFWLGLPRKFCKEHLPK--TVTDMVLEDENAKEFEAVFIGEKTG----LSGGWRAFALDHKLDDGDALVFELVKPKRF--KIH 223 89**********************534..3458***********555554....**********************987888..888 PP EE-S CS B3 96 vfrk 99 ++r+ Neem_37850_f_1 224 IIRA 227 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.1E-21	128	228	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.24E-22	130	228	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.19E-25	135	226	No hit	No description
SMART	SM01019	2.1E-24	137	228	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.717	137	228	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.7E-17	137	227	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MVENNTYEEA RQKRLHENVK KLQELGIEKV SKTLTQITNS DKKSQQRLPK PKSKNVINVV 60 EPRRSSRARN VVVSYRDHVE IDLSPLRKRS RSSSSSWASY LARPIEEVKT ASYEERVQAL 120 KAAEQLQSSL QSGFPSFVKS MVRSHVYSCF WLGLPRKFCK EHLPKTVTDM VLEDENAKEF 180 EAVFIGEKTG LSGGWRAFAL DHKLDDGDAL VFELVKPKRF KIHIIRASYL SSQKHNSNVI 240 GEEEFTSTAK NTRKRGKKLD LQANHAHVDE EMSSPQEPQL DNRKGSEQIK DADQAETNGS 300 ACRKLRKRDN SVDNGQSEKV VLVEEKDKSA SLRSRKKPDP KLFRKKT

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MVENNTYEEA RQKRLHENVK KLQELGIEKV SKTLTQITNS DKKSQQRLPK PKSKNVINVV  60
EPRRSSRARN VVVSYRDHVE IDLSPLRKRS RSSSSSWASY LARPIEEVKT ASYEERVQAL  120
KAAEQLQSSL QSGFPSFVKS MVRSHVYSCF WLGLPRKFCK EHLPKTVTDM VLEDENAKEF  180
EAVFIGEKTG LSGGWRAFAL DHKLDDGDAL VFELVKPKRF KIHIIRASYL SSQKHNSNVI  240
GEEEFTSTAK NTRKRGKKLD LQANHAHVDE EMSSPQEPQL DNRKGSEQIK DADQAETNGS  300
ACRKLRKRDN SVDNGQSEKV VLVEEKDKSA SLRSRKKPDP KLFRKKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	345	RSRKKPDPKLFRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021636351.1	1e-122	putative B3 domain-containing protein At5g58280 isoform X1
Swissprot	Q9FHB2	1e-72	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A2I4FVJ3	1e-119	A0A2I4FVJ3_JUGRE; putative B3 domain-containing protein At5g58280
STRING	XP_006464978.1	1e-132	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16141	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	2e-58	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]