PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_37811_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WOX

Protein Properties

Length: 289aa MW: 32084.2 Da PI: 4.9419

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_37811_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.5	1.4e-15	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ Neem_37811_f_1 22 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 82 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.1	1.1e-34	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Neem_37811_f_1 21 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 84 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-14	14	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.434	18	83	IPR001356	Homeobox domain
SMART	SM00389	2.1E-6	20	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-8	21	87	IPR009057	Homeodomain-like
Pfam	PF00046	2.9E-13	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEDQGQDANS LSQGSERSEP VRSRWTPKPE QILILESIFN SGMVNPPKDE TVRIRKLLEK 60 FGSVGDANVF YWFQNRRSRS RRRQRQLQAN LAEERRNQQP QATGAIQCDN TCAAMGFATS 120 PAANFASTPS TNFLVGSSSS GGLMVDDGVE NLYSMSGQMG FQEIEQSSSV TSMLCPSDTS 180 NLQFQTGIIT VFINGMPTEV PRGPLDLKTM FGQDVVLVHS SGVPVPINEF GILMQSLQHG 240 ESYYLEIPSD DQIQLYNICL YNPGFKISIN ILRNQIKMQQ MGASSMLFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF982710	1e-53	KF982710.1 Populus tomentosa WOX11/12a (WOX11/12a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022719652.1	1e-123	WUSCHEL-related homeobox 11-like
Swissprot	Q6X7J3	3e-77	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A061F179	1e-118	A0A061F179_THECC; WUSCHEL related homeobox 11
STRING	EOY10442	1e-118	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	2e-75	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]