PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3747_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 624aa    MW: 71165.1 Da    PI: 9.1192
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3747_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07438479240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W +eE ell ++ +++++g   +W+ I++++g+gR+ +++
    Neem_3747_f_4 438 KPWGKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 479
                      69***********************************99876 PP
2Myb_DNA-binding27.95.5e-09567611345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++ 
    Neem_3747_f_4 567 VWSAVQERALVQALKTFPKEtsqRWERVATAVP-GKTVNQCKKKFA 611
                      6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.4E-1292179IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.9E-1092174IPR001623DnaJ domain
SMARTSM002710.002194147IPR001623DnaJ domain
PROSITE profilePS5007611.45795155IPR001623DnaJ domain
CDDcd062571.75E-695144IPR001623DnaJ domain
PfamPF002264.0E-995152IPR001623DnaJ domain
PROSITE patternPS006360132151IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.609.8E-5433479IPR009057Homeodomain-like
SuperFamilySSF466892.32E-7434480IPR009057Homeodomain-like
PROSITE profilePS512936.483435490IPR017884SANT domain
SMARTSM007172.8E-6436489IPR001005SANT/Myb domain
PfamPF002491.9E-6438479IPR001005SANT/Myb domain
CDDcd001671.54E-4439479No hitNo description
PROSITE profilePS512939.667563618IPR017884SANT domain
SMARTSM007176.0E-9564616IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-5565610IPR009057Homeodomain-like
SuperFamilySSF466892.92E-9566621IPR009057Homeodomain-like
PfamPF002493.1E-7567610IPR001005SANT/Myb domain
CDDcd001673.24E-6568614No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAVHARYRLI SYSEEIIDGQ SIYVSSNCLP VKGAKYEPAG HAFHTAALKL LGCEDNAEVD  60
EQKVSNDKDQ GYTPSYESYS GKGKKKSGAG SDQQDHYALL GLGHLRYLAT EDQIRKSYPA  120
KQAKKDEIES HFKAVQEAYE VLIDPVKRRI YDSTDEFDDE IPADCAPQDF FKVFGPAFMR  180
NGRWSVNQPV ASLGDENTPL KEVDSFYNFW YSFKSWREFP HADEFDLEQA ESRDHKRWME  240
RQNAKLTEKA RKEEYARIRT LVDNAYKRDP RILKRKEAEK AEKQKKKEAK YLAKKLQEEE  300
AARAAEEEKR RKEEEDRRAA EAALQQKKAK EKEKKLLRKE RTRLRTISAS VKSQHLLDVS  360
EEDVESLCMS LDIEQLRTLC DKLERSEGLE QAKAIRNALG HADESEGKKQ DEKKNVQRNG  420
SVEANGSLPL KSFEKKEKPW GKEEIELLRK GMQKYPKGTS RRWEVISEYI GTGRSVEEIL  480
KATKTVLLQK PDGAKAFDSF LEKRKPAVSI TSPLTTREEV EGVPIHQVPQ KSGVKTDVSE  540
ESSSSVNQNP PYVAAVNGVS SSSDQDVWSA VQERALVQAL KTFPKETSQR WERVATAVPG  600
KTVNQCKKKF ALLKENFRSK KNAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1916927220123Zuotin
5dje_B4e-1916927220123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481066.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A067ENI80.0A0A067ENI8_CITSI; Uncharacterized protein
STRINGXP_006481066.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-122DnaJ domain ;Myb-like DNA-binding domain