PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_37391_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 127aa MW: 13926.7 Da PI: 6.4925 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38 | 2.7e-12 | 50 | 76 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Neem_37391_f_1 50 PGEPDCSYYIRTGLCRFGATCRFNHPP 76 5789*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-9 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 54 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 55 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MEFEAGIPMS RGAAVTEGPS LSPSLNQDAL WQMNLRANEA MESGSLPERP GEPDCSYYIR 60 TGLCRFGATC RFNHPPNRKL AIATARIKGE YPERVGQQEC QACNLSSSSV NDSVTILVYV 120 GSLHQKY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006480413.1 | 2e-62 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024037223.1 | 2e-62 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Refseq | XP_024955986.1 | 2e-62 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024955987.1 | 2e-62 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q8GXX7 | 8e-46 | C3H33_ARATH; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | A0A2H5PCS7 | 3e-66 | A0A2H5PCS7_CITUN; Uncharacterized protein | ||||
STRING | XP_006480413.1 | 7e-62 | (Citrus sinensis) | ||||
STRING | XP_006428579.1 | 7e-62 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21248 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 4e-48 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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