PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_37114_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 35591.6 Da PI: 6.7752 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.5e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++v+ +G+g +W + +++ g++R++k+c++rw++yl Neem_37114_f_1 14 RGPWSPEEDATLKRYVETYGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.2e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++ +eEd+++ + qlG++ W+ Ia++++ gRt++++k++w++ Neem_37114_f_1 69 GNFNEEEDQIICTLYSQLGSR-WSIIASHLP-GRTDNDVKNYWNT 111 899******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.952 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.15E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.10E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.117 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-10 | 70 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDATLKRYVE TYGTGGNWIA LPHKAGLRRC GKSCRLRWLN 60 YLRPDIKHGN FNEEEDQIIC TLYSQLGSRW SIIASHLPGR TDNDVKNYWN TKLKKKLLAG 120 KVSLGSDNMT NNFPASSNSD QTLLDSTPSL HSAPKSETYD PLFSAPQTQM SSPLPILTDI 180 GYGITVNTHE NLSLDPSNNH FIPRPGLMTR VSQFGTSLKN NSSILTSSQE GSCVSESNSL 240 AIDNKSLSLP GNNNGGVNED ADQILMDFGF GVPYEYVNNG LWYQEKVSNE VGLSYYPNLA 300 DSSNYADIKP PRGLNQSVIN QY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-26 | 14 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-26 | 14 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-26 | 14 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007012221.2 | 1e-128 | PREDICTED: myb-related protein Myb4 | ||||
TrEMBL | A0A061GIZ2 | 1e-126 | A0A061GIZ2_THECC; Myb domain protein 84, putative | ||||
STRING | EOY29840 | 1e-127 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 9e-74 | MYB family protein |