PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3589_f_8
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 291aa    MW: 33869.2 Da    PI: 8.5154
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3589_f_8genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.24.4e-5591341128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGfrFhPtdeel+ +yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+r++ky++g r+nrat sgyWkatg+dk+++s +
  Neem_3589_f_8   9 LPPGFRFHPTDEELIIYYLRNQATSRPCPV-SIIPEVDIYKFDPWELPEKAEFGENEWYFFSPRERKYPNGMRPNRATVSGYWKATGTDKAIYS-G 102
                    79****************************.89***************99999*****************************************.9 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++ vg+kk Lvfykgr pkg+ktdW+mheyrl
  Neem_3589_f_8 103 SKYVGVKKALVFYKGRPPKGTKTDWIMHEYRL 134
                    99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-673161IPR003441NAC domain
PROSITE profilePS5100561.9259161IPR003441NAC domain
PfamPF023655.0E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEAKGRSGLP PGFRFHPTDE ELIIYYLRNQ ATSRPCPVSI IPEVDIYKFD PWELPEKAEF  60
GENEWYFFSP RERKYPNGMR PNRATVSGYW KATGTDKAIY SGSKYVGVKK ALVFYKGRPP  120
KGTKTDWIMH EYRLTDSRRQ ANKNSGTMRL DDWVLCRIYK KRQTGRVVLD PKVDEESYVR  180
IGKTGTNDAT EQQQHQQMMK FPRTCSLTHL MELEYFGPIS QLLSDNPYNL NYDCHNTMDN  240
NTNAGQPDGR VEKLELGEMP YQYTDSGKFQ VSQSSILNQQ LFVNPMVYEF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-70916617170NO APICAL MERISTEM PROTEIN
1ut4_B8e-70916617170NO APICAL MERISTEM PROTEIN
1ut7_A8e-70916617170NO APICAL MERISTEM PROTEIN
1ut7_B8e-70916617170NO APICAL MERISTEM PROTEIN
3swm_A9e-70916620173NAC domain-containing protein 19
3swm_B9e-70916620173NAC domain-containing protein 19
3swm_C9e-70916620173NAC domain-containing protein 19
3swm_D9e-70916620173NAC domain-containing protein 19
3swp_A9e-70916620173NAC domain-containing protein 19
3swp_B9e-70916620173NAC domain-containing protein 19
3swp_C9e-70916620173NAC domain-containing protein 19
3swp_D9e-70916620173NAC domain-containing protein 19
4dul_A8e-70916617170NAC domain-containing protein 19
4dul_B8e-70916617170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022733044.11e-154NAC transcription factor 29-like
SwissprotK4BWV21e-125NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A061EHU21e-152A0A061EHU2_THECC; NAC domain protein, IPR003441
STRINGEOY018691e-153(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77072641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-118NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]