PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_35390_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 162aa MW: 19025.4 Da PI: 8.8398 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140.8 | 8.1e-44 | 6 | 138 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 ppGfrF Pt+eelv++yL++k++g++ ++++i+ v+iy+++PwdLp+ ++ + ++w+fF++r++++a+g r+nr t++gyWkatg+ Neem_35390_f_1 6 PPGFRFYPTEEELVSFYLHNKLQGRRedlnRLMDRIIPIVNIYNYNPWDLPQfseyLCHRDPEQWFFFIPRHENEARGGRPNRLTTAGYWKATGS 100 9*************************6653223347999***********9646653344667******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s ++++vg k+++vfy+grap+g+kt+W m+ey+ Neem_35390_f_1 101 PGLVYS-SNRAVGEKRSMVFYRGRAPNGTKTEWKMNEYK 138 ******.8899***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-46 | 3 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.821 | 5 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-23 | 6 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MVEEYPPGFR FYPTEEELVS FYLHNKLQGR REDLNRLMDR IIPIVNIYNY NPWDLPQFSE 60 YLCHRDPEQW FFFIPRHENE ARGGRPNRLT TAGYWKATGS PGLVYSSNRA VGEKRSMVFY 120 RGRAPNGTKT EWKMNEYKAI EGEASTSSAN APPRVNYIYV LS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-34 | 6 | 141 | 18 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-34 | 6 | 141 | 18 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-34 | 6 | 141 | 18 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-34 | 6 | 141 | 18 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-34 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swm_B | 5e-34 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swm_C | 5e-34 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swm_D | 5e-34 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swp_A | 5e-34 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swp_B | 5e-34 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swp_C | 5e-34 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swp_D | 5e-34 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
4dul_A | 5e-34 | 6 | 141 | 18 | 144 | NAC domain-containing protein 19 |
4dul_B | 5e-34 | 6 | 141 | 18 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006481732.1 | 2e-89 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 2e-56 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2H5MYF9 | 4e-88 | A0A2H5MYF9_CITUN; Uncharacterized protein | ||||
STRING | XP_006481732.1 | 7e-89 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10159 | 10 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-51 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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