PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_34851_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Nin-like | ||||||||
Protein Properties | Length: 318aa MW: 36327.2 Da PI: 8.0605 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.3 | 4.9e-26 | 171 | 221 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s ++s+yF+++i++AAk+L+v+lTvLK++CR++GI+RWPhRk++sl Neem_34851_f_2 171 SKTLSKGTISQYFYMTITEAAKQLNVGLTVLKKRCRELGIQRWPHRKLTSL 221 6899999*****************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.597 | 153 | 241 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.5E-22 | 174 | 221 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MATHSPNSWS TDELFVKEEA NLFSSLIQLP SEEFSGNGFT SLDWQNGLFL PDSCFDATPL 60 MESYADDPYA SLGIVPSPGF IEGEREIHTV FLVSFLFGLL LKRVLCYFPN KGDISDNYVN 120 GAGLLNELNP VFESEKQAIV LCSTNGETSE QSREEKKVRA CRKDKNTNSS SKTLSKGTIS 180 QYFYMTITEA AKQLNVGLTV LKKRCRELGI QRWPHRKLTS LQTLIKNLHA HYKKRRLEEK 240 PNIQMKEKTK RLRQSCFKAH YKKRRLMGMV DIAADQSQCS SSNIGNYHNE IWNEEIDHEQ 300 LKTVFFDSSS STNNMFFV |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 2e-32 | RWP-RK domain-containing protein |