PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_34647_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 483aa    MW: 55589.7 Da    PI: 7.8106
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_34647_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.4e-08228267345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT+eE el  + ++++G++ Wk+ a+ +g  + + ++k+ w+
   Neem_34647_f_1 228 KWTPEELELVRKFHEKHGSD-WKRLAHALG--KHRFHVKDAWR 267
                      8*******************.********9..56677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.961148221IPR017877Myb-like domain
SMARTSM007170.0021152223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-6155242IPR009057Homeodomain-like
SMARTSM007170.022225272IPR001005SANT/Myb domain
SuperFamilySSF466893.26E-9226287IPR009057Homeodomain-like
CDDcd001670.00169228257No hitNo description
PROSITE profilePS500906.632228270IPR017877Myb-like domain
PfamPF139211.4E-11229287No hitNo description
Gene3DG3DSA:1.10.10.601.4E-9243280IPR009057Homeodomain-like
PROSITE profilePS500907.956271339IPR017877Myb-like domain
SMARTSM007172.5275341IPR001005SANT/Myb domain
SuperFamilySSF466895.85E-5276394IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-7281340IPR009057Homeodomain-like
PROSITE profilePS500907.027341394IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
DDGTVFIDGR DVEAGREKEQ LEKVENQRKE KNRKRKEHDD DAQAEELHNA NREVENIVDN  60
ESTGHSSRNE AGNRKMEGDA VHKEDGKKKK KKAKSVRKSP RTKKGFEATD PSENSTVTER  120
SKKVSFSDKV QVFPSSDGSS NDKNAEDDEL VRGKRFSVEE DEMIRKSVTN YIETRGLGEE  180
GLNMVLHCRS HSEVKNCWKE IGAALPWRPS ESIYYRAHIL FERDENRKWT PEELELVRKF  240
HEKHGSDWKR LAHALGKHRF HVKDAWRRIR LPNQKKGQWS QEEYQKLFDL VNLDLRMKAS  300
EEKKSKHGML RDNISWEAIS DKLETRSNAI CCMKWYDQLT SPMVAEGKWA DTDDYGLVNA  360
LSALDACCMD DVDWDNLLEH RSGTICQKRW NQMAKHLGPD ANKQERPIIA NSNAEAEAML  420
NLMMMSGCFP DPMTYTAVLL ILQASVGWEK RICTISGNIG IKYKIPLHVR AISKVPILAE  480
LIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12633QRKEKNRK
22736RKEKNRKRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488047.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A2H5Q5340.0A0A2H5Q534_CITUN; Uncharacterized protein
STRINGXP_006488047.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-118MYB_related family protein