PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_34478_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 24505.9 Da PI: 7.6677 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.5 | 1.9e-21 | 135 | 221 | 1 | 82 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Neem_34478_f_1 135 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLF 221 99*****************************954.5444.48**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-38 | 124 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-35 | 126 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.85E-19 | 134 | 221 | No hit | No description |
PROSITE profile | PS50863 | 11.364 | 135 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-19 | 135 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-9 | 135 | 223 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MKTPANSAGA SAVMAASNPG EGGEKKTINS ELWHACAGPL VNLPAAGTHV VYFPQGHSEQ 60 VAASLKKDID GQVPNYPNLP SKLFCLLLNV TLHADPETDE VYAQMTLQPV TSFEKEDLLR 120 SDLALKSNKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELMARDL 180 HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-102 | 22 | 223 | 45 | 246 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016515513.1 | 1e-138 | PREDICTED: auxin response factor 19-like | ||||
Swissprot | Q0D9R7 | 1e-121 | ARFS_ORYSJ; Auxin response factor 19 | ||||
TrEMBL | A0A1S4DQ13 | 1e-137 | A0A1S4DQ13_TOBAC; Auxin response factor | ||||
STRING | XP_009594540.1 | 1e-136 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16229 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19220.1 | 1e-113 | auxin response factor 19 |
Publications ? help Back to Top | |||
---|---|---|---|
|