PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_33838_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 301aa    MW: 34182.1 Da    PI: 9.7907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_33838_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-1823991799
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    ++p  f+++++g++ +  + ++++++ r W v++  + ++++ ++++GW+eFv+a+ L++gDf+vFk+ g+s+f  +vk+++k
  Neem_33838_f_1 23 RIPQAFVKNFNGSSLG--QCIVKSPTKRYWVVNM--EENGNHLFFGSGWQEFVEAHSLEVGDFLVFKYCGNSKF--KVKIYDK 99
                    69*****888777544..6999************..**********************************9999..9999987 PP
2B349.11e-151942781099
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++++r ++p + a+e ++ + +s  ++l+d+  rsW vkl  +++s++ + +t+GW +F kan++  gD+++F+++  + + l v++fr 
  Neem_33838_f_1 194 HTNQCRGIIPIQLAREKKLMTVSS--VVLKDPGARSWPVKL--NRTSDGrVNMTDGWVDFWKANQIAGGDTLIFEFM--MPTVLQVHIFRG 278
                     5678999**********9988886..***************..5555555*************************75..677789999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.7337100IPR003340B3 DNA binding domain
SMARTSM010191.1E-1310100IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-2011104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1920102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-152398No hitNo description
PfamPF023624.8E-162399IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-19180278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-19181278IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.183185279IPR003340B3 DNA binding domain
SMARTSM010192.1E-8188279IPR003340B3 DNA binding domain
PfamPF023628.5E-13194278IPR003340B3 DNA binding domain
CDDcd100172.78E-9217277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
METQDSSLMV VKSVLIPDID YNRIPQAFVK NFNGSSLGQC IVKSPTKRYW VVNMEENGNH  60
LFFGSGWQEF VEAHSLEVGD FLVFKYCGNS KFKVKIYDKS CCEKIIKAAE TNNNRLTFHS  120
NNGNQNEASI RTRECKREVF ESAHGNNPID LNPGGRTSRR SEKKPLIQEL SKPTRRSVLS  180
FKSENTCFIV TWTHTNQCRG IIPIQLAREK KLMTVSSVVL KDPGARSWPV KLNRTSDGRV  240
NMTDGWVDFW KANQIAGGDT LIFEFMMPTV LQVHIFRGEG RAISIRTAVF SADKVKMFEA  300
L
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-19B3 family protein