PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_33159_a_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 164aa MW: 18680.4 Da PI: 6.5083 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 96 | 120 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ Neem_33159_a_1 96 FKTKLCCKFRN-GTCPYITNCNFAHS 120 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.2E-8 | 93 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-15 | 93 | 128 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.141 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 95 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MSYARDSSEN VVHVIVGNGP PENWLPNSND SSVWATEDEY RVWNNNHDNS ADTPSNSNSN 60 YQSQTRSNSE QPPNKKSRNS SQDVNSKSKA IGKMFFKTKL CCKFRNGTCP YITNCNFAHS 120 IEELRRPPPN WQEIVAAHEE DRAVPNEAPR EEFQIPSLGL PIWR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445697.1 | 1e-86 | zinc finger CCCH domain-containing protein 12 | ||||
Refseq | XP_006485547.1 | 1e-86 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q9LQM3 | 5e-55 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A067DGT0 | 2e-85 | A0A067DGT0_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067DQ86 | 5e-86 | A0A067DQ86_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QXC9 | 2e-85 | A0A2H5QXC9_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TZ87 | 2e-85 | V4TZ87_9ROSI; Uncharacterized protein | ||||
STRING | XP_006485547.1 | 4e-86 | (Citrus sinensis) | ||||
STRING | XP_006445697.1 | 4e-86 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 2e-57 | C3H family protein |